EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 554 lines in total Total number of methylation call strings processed: 1108 Final Cytosine Methylation Report ================================= Total number of C's analysed: 14731 Total methylated C's in CpG context: 52 Total methylated C's in CHG context: 173 Total methylated C's in CHH context: 63 Total C to T conversions in CpG context: 4112 Total C to T conversions in CHG context: 4085 Total C to T conversions in CHH context: 6246 C methylated in CpG context: 1.2% C methylated in CHG context: 4.1% C methylated in CHH context: 1.0%