/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
621
Pairs without alignments under any condition
99379
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
24525
Methylated C's in CpG context
75
Methylated C's in CHG context
309
Methylated C's in CHH context
104
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
6962
Unmethylated C's in CHG context
6893
Unmethylated C's in CHH context
10182
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
421
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
200
original bottom strand
Deduplication
Alignments analysed
621
Unique alignments
554
Duplicates removed
67
Duplicated alignments were found at 42 different positions
