CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 62 1.59 63 2 1 57 1.72 58 3 1 52 1.89 53 4 1 34 2.86 35 5 0 26 0.00 26 6 0 22 0.00 22 7 0 25 0.00 25 8 1 29 3.33 30 9 0 19 0.00 19 10 0 34 0.00 34 11 1 29 3.33 30 12 0 27 0.00 27 13 0 26 0.00 26 14 0 34 0.00 34 15 0 26 0.00 26 16 0 33 0.00 33 17 0 32 0.00 32 18 0 36 0.00 36 19 0 26 0.00 26 20 0 29 0.00 29 21 1 38 2.56 39 22 2 39 4.88 41 23 0 19 0.00 19 24 0 34 0.00 34 25 0 27 0.00 27 26 0 26 0.00 26 27 0 32 0.00 32 28 0 33 0.00 33 29 0 32 0.00 32 30 0 37 0.00 37 31 1 35 2.78 36 32 0 22 0.00 22 33 0 28 0.00 28 34 0 33 0.00 33 35 0 30 0.00 30 36 0 33 0.00 33 37 0 25 0.00 25 38 1 28 3.45 29 39 0 24 0.00 24 40 0 31 0.00 31 41 0 24 0.00 24 42 1 16 5.88 17 43 0 26 0.00 26 44 0 23 0.00 23 45 0 30 0.00 30 46 1 29 3.33 30 47 0 28 0.00 28 48 0 30 0.00 30 49 0 28 0.00 28 50 0 31 0.00 31 51 1 32 3.03 33 52 0 33 0.00 33 53 0 33 0.00 33 54 0 20 0.00 20 55 0 21 0.00 21 56 0 34 0.00 34 57 2 30 6.25 32 58 0 28 0.00 28 59 0 39 0.00 39 60 0 28 0.00 28 61 0 21 0.00 21 62 0 23 0.00 23 63 1 22 4.35 23 64 0 21 0.00 21 65 0 28 0.00 28 66 0 35 0.00 35 67 1 27 3.57 28 68 0 18 0.00 18 69 2 16 11.11 18 70 1 23 4.17 24 71 1 22 4.35 23 72 0 20 0.00 20 73 0 23 0.00 23 74 0 21 0.00 21 75 0 30 0.00 30 76 0 21 0.00 21 77 0 22 0.00 22 78 1 19 5.00 20 79 1 20 4.76 21 80 0 20 0.00 20 81 1 32 3.03 33 82 0 22 0.00 22 83 0 26 0.00 26 84 0 21 0.00 21 85 0 25 0.00 25 86 1 15 6.25 16 87 0 15 0.00 15 88 0 19 0.00 19 89 1 13 7.14 14 90 0 19 0.00 19 91 0 23 0.00 23 92 0 19 0.00 19 93 0 26 0.00 26 94 0 12 0.00 12 95 0 21 0.00 21 96 0 16 0.00 16 97 0 13 0.00 13 98 0 17 0.00 17 99 0 19 0.00 19 100 1 18 5.26 19 101 0 22 0.00 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28 24 53.85 52 2 19 8 70.37 27 3 4 17 19.05 21 4 2 26 7.14 28 5 0 17 0.00 17 6 0 10 0.00 10 7 1 23 4.17 24 8 1 33 2.94 34 9 1 25 3.85 26 10 0 32 0.00 32 11 0 27 0.00 27 12 0 24 0.00 24 13 1 36 2.70 37 14 1 30 3.23 31 15 0 30 0.00 30 16 0 31 0.00 31 17 1 27 3.57 28 18 0 21 0.00 21 19 0 18 0.00 18 20 1 21 4.55 22 21 0 29 0.00 29 22 4 35 10.26 39 23 0 27 0.00 27 24 0 21 0.00 21 25 0 30 0.00 30 26 0 30 0.00 30 27 0 36 0.00 36 28 1 34 2.86 35 29 0 45 0.00 45 30 2 28 6.67 30 31 0 25 0.00 25 32 0 35 0.00 35 33 1 38 2.56 39 34 1 29 3.33 30 35 0 22 0.00 22 36 0 27 0.00 27 37 0 27 0.00 27 38 0 30 0.00 30 39 0 30 0.00 30 40 0 37 0.00 37 41 0 26 0.00 26 42 0 37 0.00 37 43 0 34 0.00 34 44 0 20 0.00 20 45 0 26 0.00 26 46 1 33 2.94 34 47 1 29 3.33 30 48 2 23 8.00 25 49 0 21 0.00 21 50 0 27 0.00 27 51 1 21 4.55 22 52 0 27 0.00 27 53 2 30 6.25 32 54 0 35 0.00 35 55 1 31 3.12 32 56 2 23 8.00 25 57 0 21 0.00 21 58 0 22 0.00 22 59 0 19 0.00 19 60 0 19 0.00 19 61 0 20 0.00 20 62 0 19 0.00 19 63 0 17 0.00 17 64 0 29 0.00 29 65 1 34 2.86 35 66 0 25 0.00 25 67 1 31 3.12 32 68 0 26 0.00 26 69 2 22 8.33 24 70 1 27 3.57 28 71 0 17 0.00 17 72 0 20 0.00 20 73 0 25 0.00 25 74 1 21 4.55 22 75 0 13 0.00 13 76 0 26 0.00 26 77 1 26 3.70 27 78 1 29 3.33 30 79 1 13 7.14 14 80 0 22 0.00 22 81 1 15 6.25 16 82 2 22 8.33 24 83 0 22 0.00 22 84 0 16 0.00 16 85 0 21 0.00 21 86 2 15 11.76 17 87 1 23 4.17 24 88 2 21 8.70 23 89 2 19 9.52 21 90 0 18 0.00 18 91 0 16 0.00 16 92 2 19 9.52 21 93 1 20 4.76 21 94 1 20 4.76 21 95 1 15 6.25 16 96 0 10 0.00 10 97 0 16 0.00 16 98 0 17 0.00 17 99 1 11 8.33 12 100 0 17 0.00 17 101 0 15 0.00 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 10 28.57 14 2 2 12 14.29 14 3 2 26 7.14 28 4 2 19 9.52 21 5 2 30 6.25 32 6 1 37 2.63 38 7 3 44 6.38 47 8 0 37 0.00 37 9 0 26 0.00 26 10 0 40 0.00 40 11 0 33 0.00 33 12 1 35 2.78 36 13 0 46 0.00 46 14 0 41 0.00 41 15 0 47 0.00 47 16 0 55 0.00 55 17 1 38 2.56 39 18 0 50 0.00 50 19 0 52 0.00 52 20 0 43 0.00 43 21 0 46 0.00 46 22 0 48 0.00 48 23 1 42 2.33 43 24 0 61 0.00 61 25 0 53 0.00 53 26 1 51 1.92 52 27 1 56 1.75 57 28 0 51 0.00 51 29 0 50 0.00 50 30 0 46 0.00 46 31 0 43 0.00 43 32 0 51 0.00 51 33 0 45 0.00 45 34 0 36 0.00 36 35 0 39 0.00 39 36 0 43 0.00 43 37 1 48 2.04 49 38 0 47 0.00 47 39 0 45 0.00 45 40 0 42 0.00 42 41 0 55 0.00 55 42 0 41 0.00 41 43 0 49 0.00 49 44 0 36 0.00 36 45 2 48 4.00 50 46 0 58 0.00 58 47 0 43 0.00 43 48 0 50 0.00 50 49 1 41 2.38 42 50 0 50 0.00 50 51 0 32 0.00 32 52 0 39 0.00 39 53 2 40 4.76 42 54 0 46 0.00 46 55 0 40 0.00 40 56 0 36 0.00 36 57 0 36 0.00 36 58 0 40 0.00 40 59 0 39 0.00 39 60 0 38 0.00 38 61 1 36 2.70 37 62 0 32 0.00 32 63 0 48 0.00 48 64 2 37 5.13 39 65 0 35 0.00 35 66 0 38 0.00 38 67 1 30 3.23 31 68 0 36 0.00 36 69 0 35 0.00 35 70 1 35 2.78 36 71 0 40 0.00 40 72 1 36 2.70 37 73 0 27 0.00 27 74 0 42 0.00 42 75 0 42 0.00 42 76 0 30 0.00 30 77 0 42 0.00 42 78 0 41 0.00 41 79 0 55 0.00 55 80 1 34 2.86 35 81 0 32 0.00 32 82 1 34 2.86 35 83 0 23 0.00 23 84 0 30 0.00 30 85 1 40 2.44 41 86 1 39 2.50 40 87 0 29 0.00 29 88 0 32 0.00 32 89 0 20 0.00 20 90 0 36 0.00 36 91 0 32 0.00 32 92 0 24 0.00 24 93 1 33 2.94 34 94 0 27 0.00 27 95 0 22 0.00 22 96 0 29 0.00 29 97 0 25 0.00 25 98 0 34 0.00 34 99 0 16 0.00 16 100 0 22 0.00 22 101 0 28 0.00 28 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 20 13.04 23 2 2 21 8.70 23 3 3 15 16.67 18 4 0 19 0.00 19 5 0 31 0.00 31 6 0 9 0.00 9 7 1 19 5.00 20 8 0 16 0.00 16 9 0 27 0.00 27 10 0 16 0.00 16 11 0 9 0.00 9 12 0 16 0.00 16 13 0 10 0.00 10 14 0 12 0.00 12 15 0 16 0.00 16 16 0 11 0.00 11 17 0 8 0.00 8 18 0 14 0.00 14 19 0 12 0.00 12 20 0 25 0.00 25 21 0 16 0.00 16 22 0 13 0.00 13 23 0 13 0.00 13 24 0 12 0.00 12 25 0 15 0.00 15 26 0 9 0.00 9 27 0 18 0.00 18 28 0 10 0.00 10 29 0 12 0.00 12 30 0 15 0.00 15 31 0 14 0.00 14 32 0 10 0.00 10 33 0 8 0.00 8 34 0 6 0.00 6 35 0 8 0.00 8 36 0 6 0.00 6 37 0 11 0.00 11 38 0 13 0.00 13 39 0 11 0.00 11 40 0 7 0.00 7 41 0 8 0.00 8 42 0 10 0.00 10 43 0 15 0.00 15 44 0 12 0.00 12 45 0 4 0.00 4 46 0 10 0.00 10 47 0 9 0.00 9 48 0 8 0.00 8 49 0 8 0.00 8 50 0 8 0.00 8 51 0 7 0.00 7 52 0 8 0.00 8 53 0 7 0.00 7 54 0 7 0.00 7 55 0 7 0.00 7 56 0 6 0.00 6 57 0 7 0.00 7 58 0 7 0.00 7 59 0 9 0.00 9 60 0 14 0.00 14 61 0 3 0.00 3 62 0 5 0.00 5 63 0 9 0.00 9 64 0 6 0.00 6 65 0 7 0.00 7 66 0 8 0.00 8 67 0 1 0.00 1 68 0 8 0.00 8 69 0 8 0.00 8 70 0 5 0.00 5 71 0 5 0.00 5 72 0 8 0.00 8 73 0 9 0.00 9 74 0 4 0.00 4 75 0 10 0.00 10 76 0 6 0.00 6 77 1 4 20.00 5 78 0 8 0.00 8 79 0 4 0.00 4 80 0 4 0.00 4 81 0 8 0.00 8 82 0 5 0.00 5 83 0 7 0.00 7 84 0 2 0.00 2 85 0 6 0.00 6 86 0 5 0.00 5 87 0 3 0.00 3 88 0 5 0.00 5 89 0 3 0.00 3 90 0 2 0.00 2 91 0 3 0.00 3 92 0 2 0.00 2 93 0 2 0.00 2 94 0 3 0.00 3 95 0 2 0.00 2 96 0 9 0.00 9 97 0 3 0.00 3 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 6 25.00 8 2 2 11 15.38 13 3 4 16 20.00 20 4 4 12 25.00 16 5 0 25 0.00 25 6 0 26 0.00 26 7 0 7 0.00 7 8 0 20 0.00 20 9 0 21 0.00 21 10 0 25 0.00 25 11 0 14 0.00 14 12 0 13 0.00 13 13 1 9 10.00 10 14 0 18 0.00 18 15 0 16 0.00 16 16 0 9 0.00 9 17 1 15 6.25 16 18 1 14 6.67 15 19 0 13 0.00 13 20 0 7 0.00 7 21 0 11 0.00 11 22 0 15 0.00 15 23 1 14 6.67 15 24 0 15 0.00 15 25 0 10 0.00 10 26 0 14 0.00 14 27 0 10 0.00 10 28 1 14 6.67 15 29 0 13 0.00 13 30 0 16 0.00 16 31 2 12 14.29 14 32 0 7 0.00 7 33 0 9 0.00 9 34 0 11 0.00 11 35 1 1 50.00 2 36 0 16 0.00 16 37 0 7 0.00 7 38 0 10 0.00 10 39 0 9 0.00 9 40 0 12 0.00 12 41 0 8 0.00 8 42 0 4 0.00 4 43 0 6 0.00 6 44 0 14 0.00 14 45 0 9 0.00 9 46 0 7 0.00 7 47 0 13 0.00 13 48 0 9 0.00 9 49 1 11 8.33 12 50 0 9 0.00 9 51 0 11 0.00 11 52 0 8 0.00 8 53 1 10 9.09 11 54 1 7 12.50 8 55 0 7 0.00 7 56 0 9 0.00 9 57 0 10 0.00 10 58 0 6 0.00 6 59 0 13 0.00 13 60 0 6 0.00 6 61 0 8 0.00 8 62 0 4 0.00 4 63 0 9 0.00 9 64 0 3 0.00 3 65 0 4 0.00 4 66 0 5 0.00 5 67 1 6 14.29 7 68 0 9 0.00 9 69 0 6 0.00 6 70 0 4 0.00 4 71 0 8 0.00 8 72 0 7 0.00 7 73 0 7 0.00 7 74 0 8 0.00 8 75 0 7 0.00 7 76 0 4 0.00 4 77 0 7 0.00 7 78 0 6 0.00 6 79 0 3 0.00 3 80 0 4 0.00 4 81 0 3 0.00 3 82 0 1 0.00 1 83 0 6 0.00 6 84 0 8 0.00 8 85 1 11 8.33 12 86 0 5 0.00 5 87 0 5 0.00 5 88 0 5 0.00 5 89 0 5 0.00 5 90 0 5 0.00 5 91 0 6 0.00 6 92 0 3 0.00 3 93 0 0 0 94 0 4 0.00 4 95 2 7 22.22 9 96 0 3 0.00 3 97 0 2 0.00 2 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 8 0.00 8 2 1 10 9.09 11 3 2 10 16.67 12 4 1 11 8.33 12 5 0 15 0.00 15 6 0 19 0.00 19 7 0 24 0.00 24 8 0 29 0.00 29 9 0 21 0.00 21 10 0 32 0.00 32 11 0 37 0.00 37 12 0 37 0.00 37 13 0 32 0.00 32 14 0 31 0.00 31 15 0 30 0.00 30 16 0 24 0.00 24 17 0 24 0.00 24 18 0 28 0.00 28 19 0 25 0.00 25 20 0 11 0.00 11 21 0 21 0.00 21 22 0 20 0.00 20 23 0 30 0.00 30 24 0 15 0.00 15 25 0 19 0.00 19 26 0 19 0.00 19 27 0 19 0.00 19 28 1 17 5.56 18 29 0 20 0.00 20 30 0 20 0.00 20 31 0 18 0.00 18 32 0 18 0.00 18 33 1 21 4.55 22 34 0 15 0.00 15 35 0 17 0.00 17 36 0 19 0.00 19 37 0 8 0.00 8 38 0 17 0.00 17 39 0 21 0.00 21 40 0 18 0.00 18 41 0 15 0.00 15 42 0 10 0.00 10 43 0 13 0.00 13 44 1 15 6.25 16 45 0 13 0.00 13 46 0 12 0.00 12 47 0 15 0.00 15 48 0 14 0.00 14 49 0 14 0.00 14 50 0 14 0.00 14 51 0 15 0.00 15 52 0 19 0.00 19 53 1 11 8.33 12 54 0 15 0.00 15 55 0 11 0.00 11 56 0 14 0.00 14 57 0 13 0.00 13 58 0 8 0.00 8 59 0 9 0.00 9 60 0 11 0.00 11 61 0 12 0.00 12 62 0 7 0.00 7 63 0 14 0.00 14 64 0 12 0.00 12 65 1 12 7.69 13 66 0 15 0.00 15 67 0 9 0.00 9 68 0 13 0.00 13 69 0 15 0.00 15 70 0 7 0.00 7 71 0 9 0.00 9 72 0 6 0.00 6 73 0 9 0.00 9 74 0 10 0.00 10 75 0 13 0.00 13 76 0 9 0.00 9 77 0 9 0.00 9 78 0 8 0.00 8 79 0 12 0.00 12 80 0 9 0.00 9 81 0 13 0.00 13 82 0 12 0.00 12 83 0 7 0.00 7 84 0 11 0.00 11 85 0 11 0.00 11 86 0 15 0.00 15 87 0 12 0.00 12 88 0 8 0.00 8 89 0 7 0.00 7 90 0 9 0.00 9 91 1 5 16.67 6 92 0 12 0.00 12 93 0 11 0.00 11 94 0 8 0.00 8 95 0 9 0.00 9 96 0 8 0.00 8 97 0 7 0.00 7 98 0 10 0.00 10