/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-145_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-145_S38_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
461
Pairs without alignments under any condition
99539
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19052
Methylated C's in CpG context
66
Methylated C's in CHG context
200
Methylated C's in CHH context
68
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
5564
Unmethylated C's in CHG context
5129
Unmethylated C's in CHH context
8025
Unmethylated C's in Unknown context
9
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
3.8%
Percentage methylation (CHH context)
0.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
303
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
158
original bottom strand
Deduplication
Alignments analysed
461
Unique alignments
438
Duplicates removed
23
Duplicated alignments were found at 17 different positions
