CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 85 7.61 92 2 2 91 2.15 93 3 1 86 1.15 87 4 0 51 0.00 51 5 0 48 0.00 48 6 1 33 2.94 34 7 0 38 0.00 38 8 0 42 0.00 42 9 1 33 2.94 34 10 0 44 0.00 44 11 0 43 0.00 43 12 0 47 0.00 47 13 1 38 2.56 39 14 0 49 0.00 49 15 0 39 0.00 39 16 0 35 0.00 35 17 0 50 0.00 50 18 0 55 0.00 55 19 0 45 0.00 45 20 0 46 0.00 46 21 0 45 0.00 45 22 2 37 5.13 39 23 1 42 2.33 43 24 1 50 1.96 51 25 0 39 0.00 39 26 0 43 0.00 43 27 0 57 0.00 57 28 0 45 0.00 45 29 2 38 5.00 40 30 0 49 0.00 49 31 0 46 0.00 46 32 0 38 0.00 38 33 1 42 2.33 43 34 1 37 2.63 38 35 0 37 0.00 37 36 1 44 2.22 45 37 0 47 0.00 47 38 0 47 0.00 47 39 0 51 0.00 51 40 0 36 0.00 36 41 0 42 0.00 42 42 0 34 0.00 34 43 1 38 2.56 39 44 0 43 0.00 43 45 0 36 0.00 36 46 0 38 0.00 38 47 0 45 0.00 45 48 0 42 0.00 42 49 0 41 0.00 41 50 1 39 2.50 40 51 0 50 0.00 50 52 0 34 0.00 34 53 1 42 2.33 43 54 1 45 2.17 46 55 1 51 1.92 52 56 0 35 0.00 35 57 0 45 0.00 45 58 0 68 0.00 68 59 1 36 2.70 37 60 0 46 0.00 46 61 0 37 0.00 37 62 0 43 0.00 43 63 0 30 0.00 30 64 0 41 0.00 41 65 0 47 0.00 47 66 0 37 0.00 37 67 0 45 0.00 45 68 0 32 0.00 32 69 0 38 0.00 38 70 0 33 0.00 33 71 0 39 0.00 39 72 0 33 0.00 33 73 2 42 4.55 44 74 0 46 0.00 46 75 0 36 0.00 36 76 0 43 0.00 43 77 0 32 0.00 32 78 0 37 0.00 37 79 0 28 0.00 28 80 0 30 0.00 30 81 0 42 0.00 42 82 0 31 0.00 31 83 0 34 0.00 34 84 0 43 0.00 43 85 0 39 0.00 39 86 0 25 0.00 25 87 0 42 0.00 42 88 1 31 3.12 32 89 0 34 0.00 34 90 0 32 0.00 32 91 1 37 2.63 38 92 0 22 0.00 22 93 1 28 3.45 29 94 0 29 0.00 29 95 0 25 0.00 25 96 0 22 0.00 22 97 1 23 4.17 24 98 0 23 0.00 23 99 0 21 0.00 21 100 0 26 0.00 26 101 1 34 2.86 35 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 29 58.57 70 2 22 26 45.83 48 3 7 21 25.00 28 4 6 45 11.76 51 5 3 26 10.34 29 6 1 34 2.86 35 7 1 53 1.85 54 8 0 55 0.00 55 9 0 34 0.00 34 10 0 45 0.00 45 11 2 50 3.85 52 12 1 33 2.94 34 13 3 43 6.52 46 14 0 35 0.00 35 15 0 38 0.00 38 16 0 44 0.00 44 17 0 52 0.00 52 18 1 40 2.44 41 19 1 40 2.44 41 20 0 45 0.00 45 21 1 45 2.17 46 22 1 43 2.27 44 23 0 44 0.00 44 24 0 42 0.00 42 25 0 49 0.00 49 26 0 46 0.00 46 27 1 54 1.82 55 28 1 41 2.38 42 29 0 47 0.00 47 30 3 45 6.25 48 31 1 44 2.22 45 32 0 37 0.00 37 33 0 47 0.00 47 34 0 57 0.00 57 35 1 43 2.27 44 36 0 41 0.00 41 37 1 51 1.92 52 38 0 38 0.00 38 39 1 39 2.50 40 40 0 54 0.00 54 41 2 54 3.57 56 42 0 42 0.00 42 43 0 46 0.00 46 44 1 51 1.92 52 45 1 45 2.17 46 46 0 45 0.00 45 47 1 39 2.50 40 48 0 51 0.00 51 49 1 45 2.17 46 50 0 41 0.00 41 51 0 30 0.00 30 52 0 31 0.00 31 53 0 35 0.00 35 54 0 43 0.00 43 55 0 43 0.00 43 56 1 46 2.13 47 57 1 50 1.96 51 58 0 33 0.00 33 59 1 39 2.50 40 60 0 44 0.00 44 61 0 43 0.00 43 62 3 43 6.52 46 63 1 39 2.50 40 64 1 46 2.13 47 65 0 28 0.00 28 66 1 37 2.63 38 67 1 33 2.94 34 68 0 34 0.00 34 69 1 45 2.17 46 70 1 54 1.82 55 71 0 28 0.00 28 72 0 41 0.00 41 73 0 46 0.00 46 74 0 34 0.00 34 75 2 43 4.44 45 76 1 35 2.78 36 77 0 37 0.00 37 78 1 37 2.63 38 79 0 37 0.00 37 80 0 34 0.00 34 81 1 32 3.03 33 82 0 33 0.00 33 83 3 37 7.50 40 84 1 38 2.56 39 85 0 21 0.00 21 86 0 28 0.00 28 87 0 33 0.00 33 88 3 33 8.33 36 89 0 28 0.00 28 90 2 31 6.06 33 91 1 30 3.23 31 92 0 28 0.00 28 93 1 28 3.45 29 94 0 34 0.00 34 95 0 23 0.00 23 96 1 29 3.33 30 97 0 30 0.00 30 98 1 28 3.45 29 99 0 15 0.00 15 100 2 29 6.45 31 101 0 23 0.00 23 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 8 46.67 15 2 6 15 28.57 21 3 1 46 2.13 47 4 1 25 3.85 26 5 2 45 4.26 47 6 0 50 0.00 50 7 0 62 0.00 62 8 1 58 1.69 59 9 0 48 0.00 48 10 0 55 0.00 55 11 0 61 0.00 61 12 0 62 0.00 62 13 0 62 0.00 62 14 0 68 0.00 68 15 0 69 0.00 69 16 1 83 1.19 84 17 1 67 1.47 68 18 1 65 1.52 66 19 0 75 0.00 75 20 0 79 0.00 79 21 1 76 1.30 77 22 2 80 2.44 82 23 0 69 0.00 69 24 0 82 0.00 82 25 0 67 0.00 67 26 0 77 0.00 77 27 0 70 0.00 70 28 0 75 0.00 75 29 1 72 1.37 73 30 0 76 0.00 76 31 0 71 0.00 71 32 1 86 1.15 87 33 0 94 0.00 94 34 0 68 0.00 68 35 0 55 0.00 55 36 0 83 0.00 83 37 0 58 0.00 58 38 0 68 0.00 68 39 1 70 1.41 71 40 0 58 0.00 58 41 0 58 0.00 58 42 0 71 0.00 71 43 0 79 0.00 79 44 1 77 1.28 78 45 1 85 1.16 86 46 1 77 1.28 78 47 1 69 1.43 70 48 0 75 0.00 75 49 1 66 1.49 67 50 2 81 2.41 83 51 1 72 1.37 73 52 0 65 0.00 65 53 0 71 0.00 71 54 1 59 1.67 60 55 2 63 3.08 65 56 0 61 0.00 61 57 0 63 0.00 63 58 0 59 0.00 59 59 0 68 0.00 68 60 0 61 0.00 61 61 0 70 0.00 70 62 0 66 0.00 66 63 0 63 0.00 63 64 0 63 0.00 63 65 0 64 0.00 64 66 0 54 0.00 54 67 0 64 0.00 64 68 0 52 0.00 52 69 0 64 0.00 64 70 1 56 1.75 57 71 1 65 1.52 66 72 0 57 0.00 57 73 1 59 1.67 60 74 1 59 1.67 60 75 0 44 0.00 44 76 0 56 0.00 56 77 0 61 0.00 61 78 0 59 0.00 59 79 0 71 0.00 71 80 0 57 0.00 57 81 0 46 0.00 46 82 0 55 0.00 55 83 0 47 0.00 47 84 0 47 0.00 47 85 0 51 0.00 51 86 0 39 0.00 39 87 0 55 0.00 55 88 0 42 0.00 42 89 0 55 0.00 55 90 0 66 0.00 66 91 0 39 0.00 39 92 0 45 0.00 45 93 1 42 2.33 43 94 0 48 0.00 48 95 0 37 0.00 37 96 2 40 4.76 42 97 0 42 0.00 42 98 0 27 0.00 27 99 0 40 0.00 40 100 0 22 0.00 22 101 0 34 0.00 34 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 27 10.00 30 2 3 34 8.11 37 3 5 30 14.29 35 4 2 28 6.67 30 5 0 32 0.00 32 6 0 28 0.00 28 7 0 29 0.00 29 8 0 32 0.00 32 9 1 24 4.00 25 10 0 22 0.00 22 11 0 17 0.00 17 12 0 15 0.00 15 13 0 27 0.00 27 14 0 16 0.00 16 15 0 26 0.00 26 16 0 18 0.00 18 17 0 21 0.00 21 18 0 27 0.00 27 19 0 23 0.00 23 20 0 21 0.00 21 21 0 25 0.00 25 22 0 20 0.00 20 23 0 18 0.00 18 24 0 17 0.00 17 25 0 26 0.00 26 26 0 25 0.00 25 27 0 15 0.00 15 28 0 18 0.00 18 29 0 14 0.00 14 30 0 21 0.00 21 31 0 17 0.00 17 32 0 27 0.00 27 33 0 18 0.00 18 34 0 18 0.00 18 35 0 11 0.00 11 36 1 10 9.09 11 37 0 21 0.00 21 38 0 16 0.00 16 39 0 14 0.00 14 40 0 13 0.00 13 41 0 12 0.00 12 42 0 18 0.00 18 43 0 20 0.00 20 44 0 15 0.00 15 45 0 16 0.00 16 46 0 16 0.00 16 47 0 21 0.00 21 48 0 12 0.00 12 49 0 11 0.00 11 50 0 9 0.00 9 51 0 15 0.00 15 52 0 11 0.00 11 53 0 13 0.00 13 54 0 10 0.00 10 55 0 7 0.00 7 56 0 15 0.00 15 57 1 7 12.50 8 58 0 11 0.00 11 59 0 11 0.00 11 60 0 6 0.00 6 61 0 10 0.00 10 62 0 9 0.00 9 63 0 7 0.00 7 64 0 15 0.00 15 65 0 18 0.00 18 66 1 8 11.11 9 67 0 10 0.00 10 68 0 9 0.00 9 69 0 8 0.00 8 70 0 4 0.00 4 71 0 7 0.00 7 72 0 9 0.00 9 73 0 3 0.00 3 74 0 7 0.00 7 75 0 15 0.00 15 76 0 3 0.00 3 77 0 6 0.00 6 78 0 7 0.00 7 79 0 6 0.00 6 80 0 6 0.00 6 81 0 3 0.00 3 82 0 4 0.00 4 83 0 6 0.00 6 84 0 4 0.00 4 85 0 6 0.00 6 86 0 5 0.00 5 87 0 7 0.00 7 88 0 5 0.00 5 89 0 8 0.00 8 90 0 2 0.00 2 91 0 5 0.00 5 92 0 3 0.00 3 93 0 9 0.00 9 94 0 3 0.00 3 95 0 5 0.00 5 96 0 6 0.00 6 97 0 3 0.00 3 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 12 20.00 15 2 3 16 15.79 19 3 4 30 11.76 34 4 6 20 23.08 26 5 1 43 2.27 44 6 0 41 0.00 41 7 0 19 0.00 19 8 0 37 0.00 37 9 0 20 0.00 20 10 0 34 0.00 34 11 0 23 0.00 23 12 0 22 0.00 22 13 0 22 0.00 22 14 1 23 4.17 24 15 0 23 0.00 23 16 0 24 0.00 24 17 1 22 4.35 23 18 0 23 0.00 23 19 0 23 0.00 23 20 0 16 0.00 16 21 0 8 0.00 8 22 0 21 0.00 21 23 0 26 0.00 26 24 0 16 0.00 16 25 0 11 0.00 11 26 1 22 4.35 23 27 0 18 0.00 18 28 0 19 0.00 19 29 0 30 0.00 30 30 0 8 0.00 8 31 0 11 0.00 11 32 0 11 0.00 11 33 1 20 4.76 21 34 0 13 0.00 13 35 0 10 0.00 10 36 0 20 0.00 20 37 0 18 0.00 18 38 0 25 0.00 25 39 0 15 0.00 15 40 0 12 0.00 12 41 0 22 0.00 22 42 0 11 0.00 11 43 0 14 0.00 14 44 0 26 0.00 26 45 0 12 0.00 12 46 0 18 0.00 18 47 0 20 0.00 20 48 0 18 0.00 18 49 0 15 0.00 15 50 0 18 0.00 18 51 1 18 5.26 19 52 0 13 0.00 13 53 0 16 0.00 16 54 0 10 0.00 10 55 0 10 0.00 10 56 0 12 0.00 12 57 1 16 5.88 17 58 0 13 0.00 13 59 0 10 0.00 10 60 0 12 0.00 12 61 0 13 0.00 13 62 0 9 0.00 9 63 0 10 0.00 10 64 0 7 0.00 7 65 0 8 0.00 8 66 0 13 0.00 13 67 1 11 8.33 12 68 1 9 10.00 10 69 1 7 12.50 8 70 1 15 6.25 16 71 0 16 0.00 16 72 0 4 0.00 4 73 0 4 0.00 4 74 0 12 0.00 12 75 0 7 0.00 7 76 1 10 9.09 11 77 0 5 0.00 5 78 0 6 0.00 6 79 0 5 0.00 5 80 0 15 0.00 15 81 0 8 0.00 8 82 0 2 0.00 2 83 0 10 0.00 10 84 0 9 0.00 9 85 0 8 0.00 8 86 0 4 0.00 4 87 0 6 0.00 6 88 0 4 0.00 4 89 0 8 0.00 8 90 0 6 0.00 6 91 2 7 22.22 9 92 0 6 0.00 6 93 0 4 0.00 4 94 0 5 0.00 5 95 0 4 0.00 4 96 0 1 0.00 1 97 0 5 0.00 5 98 0 9 0.00 9 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 18 10.00 20 2 0 6 0.00 6 3 0 13 0.00 13 4 2 13 13.33 15 5 0 12 0.00 12 6 0 24 0.00 24 7 0 39 0.00 39 8 0 37 0.00 37 9 0 44 0.00 44 10 0 54 0.00 54 11 0 56 0.00 56 12 0 41 0.00 41 13 0 45 0.00 45 14 0 31 0.00 31 15 0 48 0.00 48 16 0 39 0.00 39 17 0 40 0.00 40 18 0 48 0.00 48 19 0 52 0.00 52 20 0 26 0.00 26 21 0 34 0.00 34 22 0 19 0.00 19 23 0 33 0.00 33 24 0 33 0.00 33 25 0 30 0.00 30 26 0 29 0.00 29 27 0 35 0.00 35 28 0 33 0.00 33 29 0 25 0.00 25 30 0 34 0.00 34 31 0 24 0.00 24 32 0 27 0.00 27 33 0 37 0.00 37 34 0 34 0.00 34 35 0 20 0.00 20 36 1 30 3.23 31 37 1 19 5.00 20 38 0 25 0.00 25 39 0 27 0.00 27 40 0 27 0.00 27 41 0 25 0.00 25 42 0 21 0.00 21 43 1 16 5.88 17 44 0 23 0.00 23 45 0 28 0.00 28 46 0 28 0.00 28 47 0 23 0.00 23 48 0 21 0.00 21 49 0 19 0.00 19 50 0 21 0.00 21 51 0 28 0.00 28 52 0 17 0.00 17 53 0 27 0.00 27 54 0 28 0.00 28 55 0 29 0.00 29 56 0 18 0.00 18 57 0 21 0.00 21 58 0 23 0.00 23 59 0 24 0.00 24 60 0 30 0.00 30 61 1 26 3.70 27 62 0 16 0.00 16 63 0 28 0.00 28 64 0 12 0.00 12 65 0 14 0.00 14 66 0 18 0.00 18 67 0 29 0.00 29 68 0 20 0.00 20 69 0 20 0.00 20 70 1 17 5.56 18 71 0 22 0.00 22 72 0 19 0.00 19 73 1 10 9.09 11 74 0 15 0.00 15 75 0 15 0.00 15 76 0 15 0.00 15 77 0 21 0.00 21 78 0 11 0.00 11 79 0 9 0.00 9 80 0 14 0.00 14 81 0 15 0.00 15 82 0 10 0.00 10 83 0 17 0.00 17 84 0 14 0.00 14 85 0 12 0.00 12 86 0 18 0.00 18 87 0 16 0.00 16 88 0 12 0.00 12 89 0 15 0.00 15 90 0 10 0.00 10 91 0 13 0.00 13 92 0 13 0.00 13 93 0 14 0.00 14 94 0 12 0.00 12 95 0 12 0.00 12 96 0 14 0.00 14 97 0 10 0.00 10 98 0 12 0.00 12