CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 61 3.17 63 2 0 62 0.00 62 3 0 68 0.00 68 4 0 49 0.00 49 5 2 38 5.00 40 6 0 31 0.00 31 7 0 38 0.00 38 8 0 24 0.00 24 9 0 26 0.00 26 10 0 35 0.00 35 11 0 35 0.00 35 12 0 29 0.00 29 13 0 33 0.00 33 14 0 44 0.00 44 15 0 30 0.00 30 16 1 33 2.94 34 17 1 47 2.08 48 18 0 32 0.00 32 19 0 30 0.00 30 20 0 30 0.00 30 21 0 43 0.00 43 22 1 46 2.13 47 23 0 32 0.00 32 24 0 35 0.00 35 25 0 31 0.00 31 26 0 32 0.00 32 27 0 45 0.00 45 28 0 38 0.00 38 29 0 34 0.00 34 30 0 38 0.00 38 31 0 38 0.00 38 32 0 44 0.00 44 33 0 40 0.00 40 34 1 30 3.23 31 35 0 31 0.00 31 36 0 41 0.00 41 37 0 37 0.00 37 38 1 30 3.23 31 39 0 40 0.00 40 40 0 41 0.00 41 41 1 29 3.33 30 42 0 34 0.00 34 43 0 32 0.00 32 44 1 22 4.35 23 45 1 33 2.94 34 46 0 25 0.00 25 47 0 41 0.00 41 48 0 40 0.00 40 49 0 31 0.00 31 50 0 45 0.00 45 51 2 33 5.71 35 52 0 33 0.00 33 53 0 39 0.00 39 54 0 26 0.00 26 55 0 30 0.00 30 56 0 34 0.00 34 57 1 23 4.17 24 58 0 35 0.00 35 59 0 50 0.00 50 60 0 36 0.00 36 61 0 27 0.00 27 62 0 33 0.00 33 63 0 21 0.00 21 64 0 25 0.00 25 65 0 32 0.00 32 66 1 19 5.00 20 67 0 29 0.00 29 68 0 17 0.00 17 69 0 17 0.00 17 70 0 20 0.00 20 71 0 27 0.00 27 72 1 23 4.17 24 73 2 22 8.33 24 74 1 21 4.55 22 75 0 23 0.00 23 76 0 21 0.00 21 77 0 27 0.00 27 78 1 19 5.00 20 79 1 21 4.55 22 80 1 26 3.70 27 81 1 30 3.23 31 82 0 27 0.00 27 83 0 17 0.00 17 84 0 19 0.00 19 85 0 19 0.00 19 86 0 16 0.00 16 87 0 29 0.00 29 88 0 19 0.00 19 89 0 18 0.00 18 90 0 24 0.00 24 91 1 13 7.14 14 92 1 18 5.26 19 93 0 27 0.00 27 94 0 20 0.00 20 95 0 9 0.00 9 96 0 8 0.00 8 97 0 14 0.00 14 98 0 15 0.00 15 99 0 14 0.00 14 100 0 26 0.00 26 101 0 16 0.00 16 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 35 12 74.47 47 2 28 20 58.33 48 3 8 17 32.00 25 4 1 41 2.38 42 5 2 26 7.14 28 6 1 21 4.55 22 7 1 43 2.27 44 8 0 43 0.00 43 9 0 25 0.00 25 10 1 39 2.50 40 11 0 43 0.00 43 12 1 34 2.86 35 13 0 28 0.00 28 14 1 34 2.86 35 15 1 30 3.23 31 16 0 38 0.00 38 17 0 33 0.00 33 18 0 32 0.00 32 19 0 41 0.00 41 20 0 28 0.00 28 21 0 32 0.00 32 22 0 34 0.00 34 23 0 37 0.00 37 24 1 38 2.56 39 25 1 41 2.38 42 26 0 37 0.00 37 27 0 45 0.00 45 28 0 35 0.00 35 29 1 36 2.70 37 30 0 41 0.00 41 31 2 29 6.45 31 32 0 34 0.00 34 33 0 32 0.00 32 34 0 40 0.00 40 35 0 31 0.00 31 36 0 48 0.00 48 37 0 32 0.00 32 38 0 28 0.00 28 39 2 30 6.25 32 40 0 33 0.00 33 41 1 42 2.33 43 42 1 48 2.04 49 43 0 34 0.00 34 44 0 25 0.00 25 45 1 26 3.70 27 46 1 33 2.94 34 47 0 37 0.00 37 48 0 36 0.00 36 49 2 37 5.13 39 50 1 20 4.76 21 51 0 23 0.00 23 52 1 28 3.45 29 53 0 39 0.00 39 54 0 34 0.00 34 55 0 32 0.00 32 56 0 27 0.00 27 57 0 33 0.00 33 58 0 36 0.00 36 59 1 35 2.78 36 60 0 29 0.00 29 61 0 30 0.00 30 62 0 21 0.00 21 63 1 35 2.78 36 64 1 29 3.33 30 65 1 30 3.23 31 66 2 33 5.71 35 67 0 25 0.00 25 68 0 17 0.00 17 69 0 31 0.00 31 70 1 32 3.03 33 71 1 22 4.35 23 72 0 18 0.00 18 73 0 29 0.00 29 74 1 25 3.85 26 75 1 25 3.85 26 76 0 25 0.00 25 77 2 23 8.00 25 78 0 20 0.00 20 79 1 22 4.35 23 80 1 26 3.70 27 81 0 17 0.00 17 82 1 23 4.17 24 83 0 29 0.00 29 84 0 25 0.00 25 85 0 12 0.00 12 86 0 16 0.00 16 87 0 22 0.00 22 88 1 23 4.17 24 89 0 22 0.00 22 90 2 22 8.33 24 91 2 16 11.11 18 92 0 25 0.00 25 93 1 12 7.69 13 94 1 19 5.00 20 95 0 24 0.00 24 96 0 20 0.00 20 97 0 18 0.00 18 98 0 20 0.00 20 99 0 13 0.00 13 100 1 11 8.33 12 101 1 11 8.33 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 12 47.83 23 2 3 22 12.00 25 3 0 33 0.00 33 4 0 29 0.00 29 5 0 50 0.00 50 6 0 54 0.00 54 7 1 54 1.82 55 8 0 48 0.00 48 9 0 44 0.00 44 10 0 35 0.00 35 11 1 45 2.17 46 12 1 40 2.44 41 13 0 43 0.00 43 14 1 50 1.96 51 15 0 70 0.00 70 16 0 57 0.00 57 17 0 50 0.00 50 18 0 44 0.00 44 19 0 46 0.00 46 20 0 54 0.00 54 21 0 60 0.00 60 22 0 63 0.00 63 23 0 55 0.00 55 24 0 57 0.00 57 25 0 65 0.00 65 26 0 69 0.00 69 27 0 48 0.00 48 28 0 68 0.00 68 29 2 56 3.45 58 30 0 78 0.00 78 31 0 72 0.00 72 32 0 53 0.00 53 33 1 44 2.22 45 34 0 40 0.00 40 35 0 72 0.00 72 36 0 47 0.00 47 37 0 47 0.00 47 38 0 56 0.00 56 39 0 66 0.00 66 40 1 48 2.04 49 41 0 46 0.00 46 42 0 58 0.00 58 43 0 38 0.00 38 44 0 57 0.00 57 45 1 85 1.16 86 46 0 69 0.00 69 47 0 56 0.00 56 48 0 68 0.00 68 49 0 43 0.00 43 50 0 63 0.00 63 51 0 68 0.00 68 52 0 70 0.00 70 53 0 57 0.00 57 54 0 50 0.00 50 55 0 44 0.00 44 56 0 43 0.00 43 57 1 57 1.72 58 58 2 46 4.17 48 59 0 50 0.00 50 60 0 48 0.00 48 61 1 47 2.08 48 62 0 51 0.00 51 63 0 51 0.00 51 64 0 49 0.00 49 65 1 46 2.13 47 66 1 43 2.27 44 67 0 43 0.00 43 68 0 45 0.00 45 69 0 49 0.00 49 70 1 38 2.56 39 71 0 52 0.00 52 72 0 51 0.00 51 73 0 41 0.00 41 74 0 52 0.00 52 75 0 47 0.00 47 76 0 48 0.00 48 77 0 42 0.00 42 78 1 50 1.96 51 79 0 42 0.00 42 80 0 39 0.00 39 81 1 44 2.22 45 82 0 34 0.00 34 83 0 40 0.00 40 84 0 39 0.00 39 85 0 29 0.00 29 86 0 36 0.00 36 87 0 33 0.00 33 88 0 37 0.00 37 89 0 33 0.00 33 90 0 38 0.00 38 91 0 31 0.00 31 92 0 37 0.00 37 93 0 33 0.00 33 94 0 25 0.00 25 95 1 24 4.00 25 96 0 25 0.00 25 97 0 20 0.00 20 98 0 25 0.00 25 99 0 25 0.00 25 100 0 13 0.00 13 101 0 30 0.00 30 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 21 16.00 25 2 3 21 12.50 24 3 3 13 18.75 16 4 1 26 3.70 27 5 0 21 0.00 21 6 0 14 0.00 14 7 0 10 0.00 10 8 0 10 0.00 10 9 0 13 0.00 13 10 0 13 0.00 13 11 0 16 0.00 16 12 0 11 0.00 11 13 0 18 0.00 18 14 0 15 0.00 15 15 0 6 0.00 6 16 0 7 0.00 7 17 0 14 0.00 14 18 0 11 0.00 11 19 1 10 9.09 11 20 0 17 0.00 17 21 0 16 0.00 16 22 0 11 0.00 11 23 1 7 12.50 8 24 0 20 0.00 20 25 0 15 0.00 15 26 0 13 0.00 13 27 0 9 0.00 9 28 1 12 7.69 13 29 0 9 0.00 9 30 0 15 0.00 15 31 0 20 0.00 20 32 0 13 0.00 13 33 0 8 0.00 8 34 1 11 8.33 12 35 0 5 0.00 5 36 0 11 0.00 11 37 0 8 0.00 8 38 0 12 0.00 12 39 0 9 0.00 9 40 0 11 0.00 11 41 0 6 0.00 6 42 0 15 0.00 15 43 0 11 0.00 11 44 0 11 0.00 11 45 0 11 0.00 11 46 0 8 0.00 8 47 0 14 0.00 14 48 0 5 0.00 5 49 0 2 0.00 2 50 0 3 0.00 3 51 0 7 0.00 7 52 0 8 0.00 8 53 0 7 0.00 7 54 0 4 0.00 4 55 0 9 0.00 9 56 0 4 0.00 4 57 0 7 0.00 7 58 0 12 0.00 12 59 0 8 0.00 8 60 0 5 0.00 5 61 0 7 0.00 7 62 0 4 0.00 4 63 0 8 0.00 8 64 0 4 0.00 4 65 1 8 11.11 9 66 0 5 0.00 5 67 0 8 0.00 8 68 0 7 0.00 7 69 0 8 0.00 8 70 0 2 0.00 2 71 0 7 0.00 7 72 0 7 0.00 7 73 0 3 0.00 3 74 0 3 0.00 3 75 0 14 0.00 14 76 0 3 0.00 3 77 0 6 0.00 6 78 0 2 0.00 2 79 0 7 0.00 7 80 0 5 0.00 5 81 0 3 0.00 3 82 0 2 0.00 2 83 0 3 0.00 3 84 0 4 0.00 4 85 0 2 0.00 2 86 0 3 0.00 3 87 0 6 0.00 6 88 0 2 0.00 2 89 0 3 0.00 3 90 0 1 0.00 1 91 0 5 0.00 5 92 0 4 0.00 4 93 0 4 0.00 4 94 0 3 0.00 3 95 0 1 0.00 1 96 0 4 0.00 4 97 0 2 0.00 2 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 6 25.00 8 2 2 13 13.33 15 3 3 18 14.29 21 4 2 11 15.38 13 5 1 30 3.23 31 6 0 22 0.00 22 7 0 7 0.00 7 8 0 21 0.00 21 9 1 11 8.33 12 10 0 26 0.00 26 11 1 12 7.69 13 12 1 10 9.09 11 13 0 8 0.00 8 14 0 20 0.00 20 15 0 18 0.00 18 16 1 8 11.11 9 17 0 13 0.00 13 18 0 24 0.00 24 19 0 6 0.00 6 20 0 5 0.00 5 21 0 10 0.00 10 22 0 12 0.00 12 23 0 15 0.00 15 24 1 14 6.67 15 25 1 7 12.50 8 26 0 19 0.00 19 27 1 12 7.69 13 28 0 12 0.00 12 29 0 14 0.00 14 30 0 5 0.00 5 31 1 9 10.00 10 32 0 6 0.00 6 33 0 17 0.00 17 34 0 9 0.00 9 35 1 10 9.09 11 36 1 7 12.50 8 37 0 8 0.00 8 38 0 6 0.00 6 39 0 11 0.00 11 40 0 9 0.00 9 41 1 10 9.09 11 42 0 6 0.00 6 43 0 9 0.00 9 44 0 14 0.00 14 45 0 6 0.00 6 46 0 6 0.00 6 47 0 12 0.00 12 48 0 17 0.00 17 49 1 8 11.11 9 50 0 7 0.00 7 51 0 10 0.00 10 52 0 9 0.00 9 53 0 12 0.00 12 54 0 6 0.00 6 55 0 4 0.00 4 56 0 9 0.00 9 57 0 6 0.00 6 58 0 6 0.00 6 59 0 16 0.00 16 60 2 5 28.57 7 61 0 7 0.00 7 62 0 6 0.00 6 63 0 4 0.00 4 64 0 3 0.00 3 65 0 8 0.00 8 66 0 9 0.00 9 67 0 4 0.00 4 68 0 10 0.00 10 69 0 10 0.00 10 70 0 13 0.00 13 71 0 4 0.00 4 72 0 5 0.00 5 73 0 5 0.00 5 74 0 3 0.00 3 75 0 5 0.00 5 76 0 4 0.00 4 77 0 4 0.00 4 78 0 5 0.00 5 79 0 2 0.00 2 80 0 5 0.00 5 81 0 5 0.00 5 82 0 6 0.00 6 83 0 6 0.00 6 84 0 5 0.00 5 85 0 5 0.00 5 86 0 2 0.00 2 87 0 6 0.00 6 88 0 4 0.00 4 89 0 6 0.00 6 90 0 4 0.00 4 91 0 5 0.00 5 92 0 4 0.00 4 93 0 3 0.00 3 94 0 3 0.00 3 95 1 1 50.00 2 96 0 0 0 97 1 6 14.29 7 98 0 7 0.00 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 9 25.00 12 2 1 13 7.14 14 3 0 4 0.00 4 4 2 11 15.38 13 5 0 13 0.00 13 6 0 14 0.00 14 7 1 28 3.45 29 8 0 30 0.00 30 9 0 41 0.00 41 10 0 36 0.00 36 11 0 26 0.00 26 12 0 30 0.00 30 13 1 28 3.45 29 14 0 25 0.00 25 15 0 41 0.00 41 16 0 26 0.00 26 17 0 30 0.00 30 18 0 29 0.00 29 19 0 30 0.00 30 20 0 15 0.00 15 21 0 18 0.00 18 22 0 26 0.00 26 23 0 19 0.00 19 24 0 14 0.00 14 25 0 22 0.00 22 26 0 23 0.00 23 27 0 17 0.00 17 28 0 26 0.00 26 29 0 21 0.00 21 30 1 17 5.56 18 31 0 14 0.00 14 32 0 20 0.00 20 33 0 14 0.00 14 34 0 25 0.00 25 35 0 14 0.00 14 36 0 26 0.00 26 37 1 10 9.09 11 38 0 16 0.00 16 39 0 18 0.00 18 40 0 12 0.00 12 41 0 13 0.00 13 42 0 17 0.00 17 43 0 18 0.00 18 44 0 16 0.00 16 45 0 20 0.00 20 46 0 13 0.00 13 47 0 17 0.00 17 48 0 24 0.00 24 49 0 19 0.00 19 50 0 22 0.00 22 51 0 15 0.00 15 52 0 16 0.00 16 53 1 14 6.67 15 54 0 19 0.00 19 55 0 17 0.00 17 56 0 17 0.00 17 57 0 17 0.00 17 58 0 8 0.00 8 59 0 15 0.00 15 60 0 13 0.00 13 61 0 15 0.00 15 62 0 11 0.00 11 63 0 14 0.00 14 64 0 9 0.00 9 65 0 11 0.00 11 66 0 12 0.00 12 67 0 17 0.00 17 68 0 8 0.00 8 69 0 9 0.00 9 70 0 12 0.00 12 71 0 15 0.00 15 72 0 6 0.00 6 73 0 15 0.00 15 74 0 21 0.00 21 75 1 14 6.67 15 76 0 10 0.00 10 77 0 12 0.00 12 78 0 10 0.00 10 79 0 18 0.00 18 80 0 11 0.00 11 81 0 11 0.00 11 82 0 13 0.00 13 83 0 12 0.00 12 84 0 10 0.00 10 85 0 10 0.00 10 86 0 7 0.00 7 87 0 8 0.00 8 88 0 9 0.00 9 89 0 9 0.00 9 90 0 13 0.00 13 91 0 13 0.00 13 92 0 15 0.00 15 93 0 19 0.00 19 94 0 10 0.00 10 95 0 12 0.00 12 96 0 10 0.00 10 97 0 3 0.00 3 98 0 8 0.00 8