/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
577
Pairs without alignments under any condition
99423
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
22626
Methylated C's in CpG context
70
Methylated C's in CHG context
248
Methylated C's in CHH context
67
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
6254
Unmethylated C's in CHG context
6148
Unmethylated C's in CHH context
9839
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
0.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
363
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
214
original bottom strand
Deduplication
Alignments analysed
577
Unique alignments
551
Duplicates removed
26
Duplicated alignments were found at 21 different positions
