CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 39 7.14 42 2 1 48 2.04 49 3 1 47 2.08 48 4 1 27 3.57 28 5 1 26 3.70 27 6 0 22 0.00 22 7 0 25 0.00 25 8 0 22 0.00 22 9 0 28 0.00 28 10 0 29 0.00 29 11 0 26 0.00 26 12 0 36 0.00 36 13 0 30 0.00 30 14 0 22 0.00 22 15 0 24 0.00 24 16 0 20 0.00 20 17 0 24 0.00 24 18 0 23 0.00 23 19 0 25 0.00 25 20 0 32 0.00 32 21 0 25 0.00 25 22 0 31 0.00 31 23 0 32 0.00 32 24 0 26 0.00 26 25 0 34 0.00 34 26 0 26 0.00 26 27 0 21 0.00 21 28 0 27 0.00 27 29 0 18 0.00 18 30 0 32 0.00 32 31 0 19 0.00 19 32 0 18 0.00 18 33 0 29 0.00 29 34 1 33 2.94 34 35 0 31 0.00 31 36 0 27 0.00 27 37 0 28 0.00 28 38 0 20 0.00 20 39 1 32 3.03 33 40 1 15 6.25 16 41 0 16 0.00 16 42 0 22 0.00 22 43 0 16 0.00 16 44 0 24 0.00 24 45 0 32 0.00 32 46 0 17 0.00 17 47 0 35 0.00 35 48 0 22 0.00 22 49 0 24 0.00 24 50 0 16 0.00 16 51 0 16 0.00 16 52 2 27 6.90 29 53 0 18 0.00 18 54 0 14 0.00 14 55 0 26 0.00 26 56 0 16 0.00 16 57 0 23 0.00 23 58 0 26 0.00 26 59 0 25 0.00 25 60 0 26 0.00 26 61 1 26 3.70 27 62 1 17 5.56 18 63 0 15 0.00 15 64 2 14 12.50 16 65 0 19 0.00 19 66 0 21 0.00 21 67 0 17 0.00 17 68 0 18 0.00 18 69 0 18 0.00 18 70 0 15 0.00 15 71 0 16 0.00 16 72 0 17 0.00 17 73 1 12 7.69 13 74 0 26 0.00 26 75 0 11 0.00 11 76 0 22 0.00 22 77 0 8 0.00 8 78 0 19 0.00 19 79 0 20 0.00 20 80 0 7 0.00 7 81 0 23 0.00 23 82 0 22 0.00 22 83 0 9 0.00 9 84 0 13 0.00 13 85 0 13 0.00 13 86 0 17 0.00 17 87 0 15 0.00 15 88 0 9 0.00 9 89 0 12 0.00 12 90 0 10 0.00 10 91 1 14 6.67 15 92 0 10 0.00 10 93 0 18 0.00 18 94 1 10 9.09 11 95 0 11 0.00 11 96 1 7 12.50 8 97 0 12 0.00 12 98 0 17 0.00 17 99 0 7 0.00 7 100 0 16 0.00 16 101 1 6 14.29 7 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31 12 72.09 43 2 16 17 48.48 33 3 11 18 37.93 29 4 1 22 4.35 23 5 1 24 4.00 25 6 0 13 0.00 13 7 1 32 3.03 33 8 1 24 4.00 25 9 0 20 0.00 20 10 0 19 0.00 19 11 1 31 3.12 32 12 1 21 4.55 22 13 0 21 0.00 21 14 0 25 0.00 25 15 1 23 4.17 24 16 0 29 0.00 29 17 0 25 0.00 25 18 0 23 0.00 23 19 1 25 3.85 26 20 0 28 0.00 28 21 0 18 0.00 18 22 1 29 3.33 30 23 0 16 0.00 16 24 2 22 8.33 24 25 1 25 3.85 26 26 0 24 0.00 24 27 0 33 0.00 33 28 0 30 0.00 30 29 0 28 0.00 28 30 1 26 3.70 27 31 2 14 12.50 16 32 1 24 4.00 25 33 1 30 3.23 31 34 0 30 0.00 30 35 0 22 0.00 22 36 0 24 0.00 24 37 0 31 0.00 31 38 0 24 0.00 24 39 0 19 0.00 19 40 0 21 0.00 21 41 0 25 0.00 25 42 1 35 2.78 36 43 0 24 0.00 24 44 1 36 2.70 37 45 0 12 0.00 12 46 0 27 0.00 27 47 0 19 0.00 19 48 0 20 0.00 20 49 0 23 0.00 23 50 0 21 0.00 21 51 0 25 0.00 25 52 0 23 0.00 23 53 0 20 0.00 20 54 0 24 0.00 24 55 1 30 3.23 31 56 0 18 0.00 18 57 0 17 0.00 17 58 0 22 0.00 22 59 2 23 8.00 25 60 0 28 0.00 28 61 1 19 5.00 20 62 0 13 0.00 13 63 0 19 0.00 19 64 0 25 0.00 25 65 1 15 6.25 16 66 0 18 0.00 18 67 0 19 0.00 19 68 0 20 0.00 20 69 2 21 8.70 23 70 0 29 0.00 29 71 0 22 0.00 22 72 1 21 4.55 22 73 1 17 5.56 18 74 0 11 0.00 11 75 0 16 0.00 16 76 1 21 4.55 22 77 0 23 0.00 23 78 1 20 4.76 21 79 0 12 0.00 12 80 1 18 5.26 19 81 0 28 0.00 28 82 0 13 0.00 13 83 0 17 0.00 17 84 0 12 0.00 12 85 1 17 5.56 18 86 0 16 0.00 16 87 1 12 7.69 13 88 1 10 9.09 11 89 0 13 0.00 13 90 0 15 0.00 15 91 0 10 0.00 10 92 1 8 11.11 9 93 2 15 11.76 17 94 0 17 0.00 17 95 0 16 0.00 16 96 0 9 0.00 9 97 0 10 0.00 10 98 2 12 14.29 14 99 0 4 0.00 4 100 1 9 10.00 10 101 0 9 0.00 9 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 9 30.77 13 2 2 11 15.38 13 3 2 21 8.70 23 4 0 19 0.00 19 5 0 18 0.00 18 6 1 26 3.70 27 7 0 38 0.00 38 8 0 34 0.00 34 9 0 25 0.00 25 10 0 32 0.00 32 11 0 33 0.00 33 12 0 28 0.00 28 13 0 23 0.00 23 14 0 30 0.00 30 15 0 35 0.00 35 16 0 33 0.00 33 17 0 29 0.00 29 18 0 40 0.00 40 19 0 44 0.00 44 20 0 36 0.00 36 21 0 36 0.00 36 22 0 34 0.00 34 23 0 45 0.00 45 24 0 41 0.00 41 25 0 34 0.00 34 26 0 34 0.00 34 27 0 40 0.00 40 28 0 40 0.00 40 29 0 36 0.00 36 30 0 35 0.00 35 31 0 44 0.00 44 32 1 47 2.08 48 33 0 48 0.00 48 34 0 33 0.00 33 35 0 26 0.00 26 36 1 32 3.03 33 37 0 37 0.00 37 38 0 39 0.00 39 39 0 36 0.00 36 40 0 46 0.00 46 41 0 38 0.00 38 42 0 42 0.00 42 43 0 42 0.00 42 44 0 30 0.00 30 45 0 33 0.00 33 46 0 34 0.00 34 47 0 30 0.00 30 48 0 29 0.00 29 49 0 31 0.00 31 50 1 50 1.96 51 51 0 30 0.00 30 52 0 28 0.00 28 53 0 35 0.00 35 54 2 38 5.00 40 55 1 27 3.57 28 56 0 31 0.00 31 57 0 34 0.00 34 58 0 28 0.00 28 59 0 31 0.00 31 60 0 32 0.00 32 61 0 29 0.00 29 62 0 31 0.00 31 63 0 43 0.00 43 64 1 24 4.00 25 65 0 21 0.00 21 66 0 25 0.00 25 67 0 24 0.00 24 68 0 28 0.00 28 69 0 30 0.00 30 70 0 21 0.00 21 71 0 22 0.00 22 72 1 34 2.86 35 73 0 25 0.00 25 74 0 37 0.00 37 75 0 31 0.00 31 76 0 29 0.00 29 77 0 28 0.00 28 78 0 36 0.00 36 79 0 23 0.00 23 80 0 20 0.00 20 81 0 27 0.00 27 82 0 15 0.00 15 83 0 19 0.00 19 84 1 29 3.33 30 85 0 20 0.00 20 86 0 21 0.00 21 87 0 16 0.00 16 88 0 26 0.00 26 89 0 26 0.00 26 90 0 17 0.00 17 91 0 21 0.00 21 92 0 24 0.00 24 93 0 21 0.00 21 94 0 15 0.00 15 95 0 16 0.00 16 96 0 20 0.00 20 97 0 24 0.00 24 98 0 22 0.00 22 99 0 20 0.00 20 100 0 13 0.00 13 101 0 25 0.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 6 33.33 9 2 4 16 20.00 20 3 2 20 9.09 22 4 1 18 5.26 19 5 0 19 0.00 19 6 0 9 0.00 9 7 0 10 0.00 10 8 0 10 0.00 10 9 0 8 0.00 8 10 0 10 0.00 10 11 0 11 0.00 11 12 0 11 0.00 11 13 0 11 0.00 11 14 0 7 0.00 7 15 0 12 0.00 12 16 0 6 0.00 6 17 0 7 0.00 7 18 0 12 0.00 12 19 0 14 0.00 14 20 0 12 0.00 12 21 0 12 0.00 12 22 0 9 0.00 9 23 0 9 0.00 9 24 0 8 0.00 8 25 0 8 0.00 8 26 1 10 9.09 11 27 0 8 0.00 8 28 1 5 16.67 6 29 0 13 0.00 13 30 0 7 0.00 7 31 0 12 0.00 12 32 0 7 0.00 7 33 0 11 0.00 11 34 0 5 0.00 5 35 0 12 0.00 12 36 0 5 0.00 5 37 0 9 0.00 9 38 0 8 0.00 8 39 0 3 0.00 3 40 0 7 0.00 7 41 0 8 0.00 8 42 0 7 0.00 7 43 0 6 0.00 6 44 0 7 0.00 7 45 0 2 0.00 2 46 0 2 0.00 2 47 0 9 0.00 9 48 0 3 0.00 3 49 0 4 0.00 4 50 0 3 0.00 3 51 0 6 0.00 6 52 0 4 0.00 4 53 0 2 0.00 2 54 0 7 0.00 7 55 0 6 0.00 6 56 0 7 0.00 7 57 0 3 0.00 3 58 0 5 0.00 5 59 0 7 0.00 7 60 0 2 0.00 2 61 0 4 0.00 4 62 0 2 0.00 2 63 0 5 0.00 5 64 0 4 0.00 4 65 0 6 0.00 6 66 0 4 0.00 4 67 0 2 0.00 2 68 0 4 0.00 4 69 0 8 0.00 8 70 0 3 0.00 3 71 0 5 0.00 5 72 0 5 0.00 5 73 0 1 0.00 1 74 0 3 0.00 3 75 0 2 0.00 2 76 0 1 0.00 1 77 0 4 0.00 4 78 0 2 0.00 2 79 0 4 0.00 4 80 0 6 0.00 6 81 0 2 0.00 2 82 0 3 0.00 3 83 0 2 0.00 2 84 0 1 0.00 1 85 0 4 0.00 4 86 0 1 0.00 1 87 0 2 0.00 2 88 0 2 0.00 2 89 0 0 0 90 0 5 0.00 5 91 0 0 0 92 0 5 0.00 5 93 0 0 0 94 0 3 0.00 3 95 0 2 0.00 2 96 0 3 0.00 3 97 0 4 0.00 4 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 5 0.00 5 2 2 3 40.00 5 3 3 17 15.00 20 4 3 9 25.00 12 5 0 14 0.00 14 6 0 9 0.00 9 7 0 8 0.00 8 8 0 18 0.00 18 9 0 8 0.00 8 10 0 9 0.00 9 11 0 10 0.00 10 12 0 16 0.00 16 13 0 9 0.00 9 14 0 10 0.00 10 15 0 14 0.00 14 16 0 8 0.00 8 17 0 14 0.00 14 18 0 9 0.00 9 19 0 8 0.00 8 20 0 5 0.00 5 21 0 5 0.00 5 22 0 14 0.00 14 23 0 5 0.00 5 24 1 8 11.11 9 25 0 6 0.00 6 26 1 5 16.67 6 27 0 7 0.00 7 28 0 8 0.00 8 29 1 7 12.50 8 30 0 6 0.00 6 31 0 6 0.00 6 32 0 5 0.00 5 33 0 8 0.00 8 34 0 8 0.00 8 35 0 4 0.00 4 36 0 7 0.00 7 37 0 7 0.00 7 38 0 9 0.00 9 39 0 9 0.00 9 40 0 7 0.00 7 41 0 8 0.00 8 42 0 8 0.00 8 43 0 3 0.00 3 44 0 8 0.00 8 45 0 8 0.00 8 46 0 6 0.00 6 47 0 6 0.00 6 48 0 8 0.00 8 49 0 6 0.00 6 50 0 3 0.00 3 51 0 8 0.00 8 52 1 4 20.00 5 53 0 8 0.00 8 54 0 3 0.00 3 55 0 5 0.00 5 56 0 5 0.00 5 57 0 5 0.00 5 58 0 5 0.00 5 59 0 7 0.00 7 60 1 3 25.00 4 61 0 11 0.00 11 62 0 6 0.00 6 63 0 4 0.00 4 64 0 6 0.00 6 65 0 3 0.00 3 66 0 7 0.00 7 67 0 4 0.00 4 68 0 4 0.00 4 69 0 7 0.00 7 70 0 4 0.00 4 71 0 5 0.00 5 72 0 5 0.00 5 73 0 7 0.00 7 74 0 6 0.00 6 75 1 3 25.00 4 76 0 0 0 77 0 2 0.00 2 78 0 9 0.00 9 79 0 1 0.00 1 80 0 5 0.00 5 81 0 1 0.00 1 82 0 4 0.00 4 83 0 4 0.00 4 84 0 2 0.00 2 85 0 7 0.00 7 86 0 5 0.00 5 87 0 3 0.00 3 88 1 5 16.67 6 89 0 1 0.00 1 90 0 2 0.00 2 91 0 4 0.00 4 92 0 4 0.00 4 93 0 3 0.00 3 94 0 2 0.00 2 95 0 1 0.00 1 96 0 1 0.00 1 97 0 3 0.00 3 98 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 4 20.00 5 2 0 3 0.00 3 3 1 1 50.00 2 4 0 3 0.00 3 5 0 11 0.00 11 6 0 9 0.00 9 7 0 21 0.00 21 8 0 18 0.00 18 9 0 17 0.00 17 10 0 23 0.00 23 11 0 21 0.00 21 12 0 26 0.00 26 13 0 22 0.00 22 14 0 19 0.00 19 15 0 18 0.00 18 16 0 19 0.00 19 17 0 19 0.00 19 18 0 17 0.00 17 19 0 20 0.00 20 20 0 12 0.00 12 21 0 13 0.00 13 22 0 12 0.00 12 23 0 10 0.00 10 24 0 14 0.00 14 25 0 11 0.00 11 26 0 19 0.00 19 27 0 10 0.00 10 28 0 22 0.00 22 29 0 10 0.00 10 30 0 9 0.00 9 31 0 7 0.00 7 32 0 6 0.00 6 33 0 19 0.00 19 34 0 10 0.00 10 35 0 6 0.00 6 36 0 10 0.00 10 37 0 5 0.00 5 38 0 17 0.00 17 39 0 14 0.00 14 40 0 15 0.00 15 41 0 15 0.00 15 42 0 6 0.00 6 43 1 15 6.25 16 44 0 10 0.00 10 45 0 13 0.00 13 46 0 9 0.00 9 47 0 12 0.00 12 48 0 8 0.00 8 49 0 12 0.00 12 50 0 14 0.00 14 51 0 6 0.00 6 52 0 6 0.00 6 53 0 8 0.00 8 54 0 7 0.00 7 55 0 8 0.00 8 56 0 8 0.00 8 57 0 5 0.00 5 58 0 9 0.00 9 59 0 6 0.00 6 60 0 6 0.00 6 61 0 10 0.00 10 62 0 5 0.00 5 63 0 15 0.00 15 64 0 13 0.00 13 65 0 5 0.00 5 66 0 3 0.00 3 67 0 8 0.00 8 68 0 11 0.00 11 69 0 4 0.00 4 70 1 5 16.67 6 71 0 7 0.00 7 72 0 2 0.00 2 73 0 5 0.00 5 74 0 5 0.00 5 75 0 9 0.00 9 76 0 3 0.00 3 77 0 4 0.00 4 78 0 5 0.00 5 79 0 5 0.00 5 80 0 6 0.00 6 81 0 8 0.00 8 82 0 4 0.00 4 83 0 12 0.00 12 84 0 6 0.00 6 85 0 3 0.00 3 86 0 6 0.00 6 87 0 6 0.00 6 88 0 5 0.00 5 89 0 3 0.00 3 90 1 5 16.67 6 91 0 1 0.00 1 92 0 4 0.00 4 93 0 6 0.00 6 94 0 5 0.00 5 95 0 2 0.00 2 96 0 3 0.00 3 97 0 4 0.00 4 98 0 5 0.00 5