/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
402
Pairs without alignments under any condition
99598
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
15423
Methylated C's in CpG context
51
Methylated C's in CHG context
204
Methylated C's in CHH context
41
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
4476
Unmethylated C's in CHG context
4350
Unmethylated C's in CHH context
6301
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
4.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
264
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
138
original bottom strand
Deduplication
Alignments analysed
402
Unique alignments
382
Duplicates removed
20
Duplicated alignments were found at 16 different positions
