CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 32 5.88 34 2 0 27 0.00 27 3 0 40 0.00 40 4 0 14 0.00 14 5 1 15 6.25 16 6 0 17 0.00 17 7 0 15 0.00 15 8 0 16 0.00 16 9 0 14 0.00 14 10 0 27 0.00 27 11 1 16 5.88 17 12 0 20 0.00 20 13 0 18 0.00 18 14 0 12 0.00 12 15 0 14 0.00 14 16 0 23 0.00 23 17 0 12 0.00 12 18 0 26 0.00 26 19 1 22 4.35 23 20 0 28 0.00 28 21 1 25 3.85 26 22 0 20 0.00 20 23 0 18 0.00 18 24 0 18 0.00 18 25 0 18 0.00 18 26 0 22 0.00 22 27 0 27 0.00 27 28 0 17 0.00 17 29 0 19 0.00 19 30 0 25 0.00 25 31 0 23 0.00 23 32 0 21 0.00 21 33 0 14 0.00 14 34 1 13 7.14 14 35 0 22 0.00 22 36 1 20 4.76 21 37 1 17 5.56 18 38 0 23 0.00 23 39 0 25 0.00 25 40 0 14 0.00 14 41 0 18 0.00 18 42 0 18 0.00 18 43 0 11 0.00 11 44 0 16 0.00 16 45 0 18 0.00 18 46 0 23 0.00 23 47 1 15 6.25 16 48 1 17 5.56 18 49 0 23 0.00 23 50 1 18 5.26 19 51 1 26 3.70 27 52 0 11 0.00 11 53 1 20 4.76 21 54 0 21 0.00 21 55 0 15 0.00 15 56 0 17 0.00 17 57 0 21 0.00 21 58 0 26 0.00 26 59 0 25 0.00 25 60 0 22 0.00 22 61 0 10 0.00 10 62 0 18 0.00 18 63 0 8 0.00 8 64 1 15 6.25 16 65 0 20 0.00 20 66 0 19 0.00 19 67 0 16 0.00 16 68 0 20 0.00 20 69 0 17 0.00 17 70 0 17 0.00 17 71 0 16 0.00 16 72 0 17 0.00 17 73 0 14 0.00 14 74 1 18 5.26 19 75 0 17 0.00 17 76 0 18 0.00 18 77 0 18 0.00 18 78 0 16 0.00 16 79 0 13 0.00 13 80 0 12 0.00 12 81 0 23 0.00 23 82 0 9 0.00 9 83 0 8 0.00 8 84 0 15 0.00 15 85 0 15 0.00 15 86 0 13 0.00 13 87 0 17 0.00 17 88 0 12 0.00 12 89 0 8 0.00 8 90 1 11 8.33 12 91 1 13 7.14 14 92 0 15 0.00 15 93 1 18 5.26 19 94 0 13 0.00 13 95 0 13 0.00 13 96 0 18 0.00 18 97 0 13 0.00 13 98 0 15 0.00 15 99 0 16 0.00 16 100 0 23 0.00 23 101 1 12 7.69 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19 10 65.52 29 2 18 6 75.00 24 3 4 12 25.00 16 4 1 18 5.26 19 5 0 13 0.00 13 6 0 8 0.00 8 7 0 23 0.00 23 8 0 19 0.00 19 9 1 12 7.69 13 10 2 17 10.53 19 11 1 25 3.85 26 12 0 16 0.00 16 13 0 20 0.00 20 14 0 18 0.00 18 15 0 17 0.00 17 16 0 16 0.00 16 17 0 21 0.00 21 18 0 14 0.00 14 19 0 16 0.00 16 20 0 20 0.00 20 21 0 15 0.00 15 22 1 14 6.67 15 23 0 22 0.00 22 24 0 12 0.00 12 25 0 20 0.00 20 26 1 28 3.45 29 27 0 13 0.00 13 28 0 21 0.00 21 29 0 17 0.00 17 30 0 13 0.00 13 31 0 21 0.00 21 32 1 21 4.55 22 33 0 21 0.00 21 34 0 21 0.00 21 35 0 20 0.00 20 36 0 31 0.00 31 37 4 20 16.67 24 38 0 14 0.00 14 39 0 16 0.00 16 40 0 22 0.00 22 41 0 29 0.00 29 42 0 19 0.00 19 43 0 16 0.00 16 44 0 15 0.00 15 45 0 17 0.00 17 46 0 19 0.00 19 47 0 29 0.00 29 48 0 16 0.00 16 49 0 16 0.00 16 50 0 16 0.00 16 51 0 11 0.00 11 52 0 25 0.00 25 53 0 23 0.00 23 54 1 21 4.55 22 55 2 17 10.53 19 56 0 12 0.00 12 57 2 20 9.09 22 58 1 19 5.00 20 59 1 11 8.33 12 60 0 14 0.00 14 61 0 23 0.00 23 62 0 19 0.00 19 63 2 12 14.29 14 64 0 22 0.00 22 65 0 12 0.00 12 66 0 15 0.00 15 67 0 23 0.00 23 68 0 18 0.00 18 69 0 10 0.00 10 70 3 18 14.29 21 71 0 19 0.00 19 72 0 20 0.00 20 73 0 11 0.00 11 74 1 15 6.25 16 75 2 18 10.00 20 76 0 7 0.00 7 77 1 20 4.76 21 78 0 15 0.00 15 79 0 14 0.00 14 80 0 21 0.00 21 81 0 13 0.00 13 82 1 21 4.55 22 83 0 19 0.00 19 84 0 10 0.00 10 85 0 11 0.00 11 86 1 11 8.33 12 87 0 17 0.00 17 88 0 12 0.00 12 89 0 9 0.00 9 90 0 16 0.00 16 91 1 11 8.33 12 92 0 15 0.00 15 93 0 8 0.00 8 94 0 8 0.00 8 95 0 16 0.00 16 96 0 11 0.00 11 97 0 16 0.00 16 98 2 14 12.50 16 99 0 9 0.00 9 100 0 9 0.00 9 101 0 17 0.00 17 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 8 42.86 14 2 1 6 14.29 7 3 1 12 7.69 13 4 0 20 0.00 20 5 0 23 0.00 23 6 0 29 0.00 29 7 0 25 0.00 25 8 0 24 0.00 24 9 0 29 0.00 29 10 0 22 0.00 22 11 1 21 4.55 22 12 0 29 0.00 29 13 0 24 0.00 24 14 0 37 0.00 37 15 0 34 0.00 34 16 1 31 3.12 32 17 0 30 0.00 30 18 0 21 0.00 21 19 0 32 0.00 32 20 0 27 0.00 27 21 0 18 0.00 18 22 0 28 0.00 28 23 0 30 0.00 30 24 0 29 0.00 29 25 0 36 0.00 36 26 0 29 0.00 29 27 0 34 0.00 34 28 0 38 0.00 38 29 0 42 0.00 42 30 0 43 0.00 43 31 0 34 0.00 34 32 0 37 0.00 37 33 0 41 0.00 41 34 0 32 0.00 32 35 0 18 0.00 18 36 0 18 0.00 18 37 0 25 0.00 25 38 0 30 0.00 30 39 1 29 3.33 30 40 0 22 0.00 22 41 0 28 0.00 28 42 1 24 4.00 25 43 0 30 0.00 30 44 0 32 0.00 32 45 0 33 0.00 33 46 0 42 0.00 42 47 0 32 0.00 32 48 0 28 0.00 28 49 1 29 3.33 30 50 0 25 0.00 25 51 0 36 0.00 36 52 0 29 0.00 29 53 0 30 0.00 30 54 2 20 9.09 22 55 1 32 3.03 33 56 0 33 0.00 33 57 0 29 0.00 29 58 0 24 0.00 24 59 0 23 0.00 23 60 0 26 0.00 26 61 0 30 0.00 30 62 1 26 3.70 27 63 0 22 0.00 22 64 0 28 0.00 28 65 0 24 0.00 24 66 0 27 0.00 27 67 0 27 0.00 27 68 0 26 0.00 26 69 0 22 0.00 22 70 0 31 0.00 31 71 0 29 0.00 29 72 0 20 0.00 20 73 0 22 0.00 22 74 0 31 0.00 31 75 0 27 0.00 27 76 0 26 0.00 26 77 0 28 0.00 28 78 1 23 4.17 24 79 1 25 3.85 26 80 0 15 0.00 15 81 0 14 0.00 14 82 0 21 0.00 21 83 0 22 0.00 22 84 0 17 0.00 17 85 0 18 0.00 18 86 0 20 0.00 20 87 0 29 0.00 29 88 0 23 0.00 23 89 1 20 4.76 21 90 0 26 0.00 26 91 0 21 0.00 21 92 0 20 0.00 20 93 0 19 0.00 19 94 0 20 0.00 20 95 0 19 0.00 19 96 0 20 0.00 20 97 1 15 6.25 16 98 0 11 0.00 11 99 0 9 0.00 9 100 0 9 0.00 9 101 1 18 5.26 19 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 13 7.14 14 2 3 12 20.00 15 3 5 13 27.78 18 4 2 14 12.50 16 5 0 19 0.00 19 6 0 13 0.00 13 7 0 12 0.00 12 8 0 8 0.00 8 9 1 11 8.33 12 10 0 11 0.00 11 11 0 14 0.00 14 12 0 17 0.00 17 13 0 9 0.00 9 14 0 12 0.00 12 15 0 15 0.00 15 16 0 4 0.00 4 17 0 10 0.00 10 18 0 10 0.00 10 19 0 12 0.00 12 20 0 10 0.00 10 21 0 9 0.00 9 22 0 10 0.00 10 23 0 10 0.00 10 24 0 6 0.00 6 25 0 8 0.00 8 26 0 8 0.00 8 27 0 7 0.00 7 28 0 9 0.00 9 29 0 8 0.00 8 30 0 10 0.00 10 31 0 12 0.00 12 32 0 11 0.00 11 33 0 5 0.00 5 34 0 8 0.00 8 35 0 7 0.00 7 36 0 8 0.00 8 37 0 10 0.00 10 38 0 6 0.00 6 39 0 8 0.00 8 40 0 4 0.00 4 41 0 5 0.00 5 42 0 8 0.00 8 43 0 8 0.00 8 44 0 5 0.00 5 45 0 3 0.00 3 46 0 4 0.00 4 47 0 5 0.00 5 48 1 2 33.33 3 49 0 6 0.00 6 50 0 4 0.00 4 51 0 5 0.00 5 52 0 1 0.00 1 53 0 7 0.00 7 54 0 5 0.00 5 55 0 5 0.00 5 56 0 4 0.00 4 57 0 5 0.00 5 58 0 6 0.00 6 59 0 6 0.00 6 60 0 5 0.00 5 61 0 1 0.00 1 62 0 8 0.00 8 63 0 7 0.00 7 64 0 2 0.00 2 65 0 3 0.00 3 66 0 1 0.00 1 67 0 6 0.00 6 68 0 4 0.00 4 69 0 5 0.00 5 70 0 5 0.00 5 71 0 5 0.00 5 72 0 6 0.00 6 73 0 3 0.00 3 74 1 4 20.00 5 75 0 9 0.00 9 76 0 4 0.00 4 77 0 4 0.00 4 78 0 4 0.00 4 79 0 2 0.00 2 80 0 6 0.00 6 81 0 2 0.00 2 82 0 3 0.00 3 83 0 2 0.00 2 84 0 2 0.00 2 85 0 3 0.00 3 86 0 5 0.00 5 87 0 4 0.00 4 88 0 3 0.00 3 89 0 3 0.00 3 90 0 3 0.00 3 91 0 2 0.00 2 92 0 5 0.00 5 93 0 4 0.00 4 94 0 1 0.00 1 95 0 2 0.00 2 96 0 4 0.00 4 97 0 5 0.00 5 98 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 1 10 9.09 11 3 1 13 7.14 14 4 1 6 14.29 7 5 0 17 0.00 17 6 0 20 0.00 20 7 1 7 12.50 8 8 1 11 8.33 12 9 1 7 12.50 8 10 0 14 0.00 14 11 0 10 0.00 10 12 0 15 0.00 15 13 1 10 9.09 11 14 0 14 0.00 14 15 0 16 0.00 16 16 1 6 14.29 7 17 0 16 0.00 16 18 0 10 0.00 10 19 0 11 0.00 11 20 0 8 0.00 8 21 0 8 0.00 8 22 0 8 0.00 8 23 0 8 0.00 8 24 0 11 0.00 11 25 0 7 0.00 7 26 0 10 0.00 10 27 1 9 10.00 10 28 0 7 0.00 7 29 1 8 11.11 9 30 1 4 20.00 5 31 0 3 0.00 3 32 0 8 0.00 8 33 0 12 0.00 12 34 0 3 0.00 3 35 0 8 0.00 8 36 0 4 0.00 4 37 0 6 0.00 6 38 0 8 0.00 8 39 1 10 9.09 11 40 0 3 0.00 3 41 0 4 0.00 4 42 0 11 0.00 11 43 0 7 0.00 7 44 0 6 0.00 6 45 0 6 0.00 6 46 0 9 0.00 9 47 0 10 0.00 10 48 0 9 0.00 9 49 0 5 0.00 5 50 0 5 0.00 5 51 0 7 0.00 7 52 0 7 0.00 7 53 0 6 0.00 6 54 0 8 0.00 8 55 0 4 0.00 4 56 0 3 0.00 3 57 0 6 0.00 6 58 0 4 0.00 4 59 0 10 0.00 10 60 0 6 0.00 6 61 0 6 0.00 6 62 0 2 0.00 2 63 0 7 0.00 7 64 0 3 0.00 3 65 0 4 0.00 4 66 0 8 0.00 8 67 0 6 0.00 6 68 1 3 25.00 4 69 0 4 0.00 4 70 0 5 0.00 5 71 0 3 0.00 3 72 0 4 0.00 4 73 0 5 0.00 5 74 0 4 0.00 4 75 0 5 0.00 5 76 0 6 0.00 6 77 0 4 0.00 4 78 1 3 25.00 4 79 0 2 0.00 2 80 0 4 0.00 4 81 0 2 0.00 2 82 0 1 0.00 1 83 0 4 0.00 4 84 0 2 0.00 2 85 0 4 0.00 4 86 0 6 0.00 6 87 0 6 0.00 6 88 0 0 0 89 0 3 0.00 3 90 0 3 0.00 3 91 0 4 0.00 4 92 0 2 0.00 2 93 0 2 0.00 2 94 0 6 0.00 6 95 0 3 0.00 3 96 0 1 0.00 1 97 0 2 0.00 2 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 1 7 12.50 8 3 0 4 0.00 4 4 0 5 0.00 5 5 0 8 0.00 8 6 0 12 0.00 12 7 0 12 0.00 12 8 0 19 0.00 19 9 0 16 0.00 16 10 0 15 0.00 15 11 1 20 4.76 21 12 0 15 0.00 15 13 0 17 0.00 17 14 0 17 0.00 17 15 0 18 0.00 18 16 0 23 0.00 23 17 0 15 0.00 15 18 0 20 0.00 20 19 0 23 0.00 23 20 0 11 0.00 11 21 0 17 0.00 17 22 0 11 0.00 11 23 0 18 0.00 18 24 0 12 0.00 12 25 0 17 0.00 17 26 0 17 0.00 17 27 0 8 0.00 8 28 0 26 0.00 26 29 0 9 0.00 9 30 0 11 0.00 11 31 0 14 0.00 14 32 0 7 0.00 7 33 0 18 0.00 18 34 0 18 0.00 18 35 0 10 0.00 10 36 0 13 0.00 13 37 0 11 0.00 11 38 0 12 0.00 12 39 0 25 0.00 25 40 0 14 0.00 14 41 0 10 0.00 10 42 0 12 0.00 12 43 0 18 0.00 18 44 0 14 0.00 14 45 0 12 0.00 12 46 0 12 0.00 12 47 0 16 0.00 16 48 0 14 0.00 14 49 0 15 0.00 15 50 0 10 0.00 10 51 0 12 0.00 12 52 0 4 0.00 4 53 0 7 0.00 7 54 0 11 0.00 11 55 0 12 0.00 12 56 0 10 0.00 10 57 0 8 0.00 8 58 0 7 0.00 7 59 0 5 0.00 5 60 0 14 0.00 14 61 0 9 0.00 9 62 0 12 0.00 12 63 0 7 0.00 7 64 0 9 0.00 9 65 0 7 0.00 7 66 0 12 0.00 12 67 0 7 0.00 7 68 0 7 0.00 7 69 0 10 0.00 10 70 0 6 0.00 6 71 0 5 0.00 5 72 0 7 0.00 7 73 0 10 0.00 10 74 0 5 0.00 5 75 0 9 0.00 9 76 0 5 0.00 5 77 0 7 0.00 7 78 0 5 0.00 5 79 0 10 0.00 10 80 0 6 0.00 6 81 0 10 0.00 10 82 0 7 0.00 7 83 0 8 0.00 8 84 0 9 0.00 9 85 0 7 0.00 7 86 0 10 0.00 10 87 0 7 0.00 7 88 0 9 0.00 9 89 0 4 0.00 4 90 0 5 0.00 5 91 0 2 0.00 2 92 1 6 14.29 7 93 0 2 0.00 2 94 0 3 0.00 3 95 0 6 0.00 6 96 0 6 0.00 6 97 0 5 0.00 5 98 0 9 0.00 9