CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 51 3.77 53 2 0 61 0.00 61 3 0 57 0.00 57 4 0 28 0.00 28 5 2 31 6.06 33 6 0 21 0.00 21 7 1 20 4.76 21 8 0 24 0.00 24 9 0 31 0.00 31 10 0 30 0.00 30 11 0 33 0.00 33 12 0 30 0.00 30 13 0 31 0.00 31 14 1 31 3.12 32 15 0 24 0.00 24 16 0 37 0.00 37 17 0 29 0.00 29 18 0 27 0.00 27 19 0 26 0.00 26 20 2 34 5.56 36 21 0 33 0.00 33 22 0 31 0.00 31 23 0 29 0.00 29 24 0 38 0.00 38 25 0 35 0.00 35 26 1 39 2.50 40 27 1 39 2.50 40 28 0 22 0.00 22 29 0 32 0.00 32 30 1 24 4.00 25 31 0 36 0.00 36 32 0 31 0.00 31 33 0 33 0.00 33 34 0 28 0.00 28 35 1 38 2.56 39 36 0 24 0.00 24 37 0 27 0.00 27 38 0 31 0.00 31 39 1 29 3.33 30 40 0 22 0.00 22 41 0 27 0.00 27 42 0 27 0.00 27 43 0 26 0.00 26 44 0 32 0.00 32 45 1 23 4.17 24 46 0 27 0.00 27 47 0 31 0.00 31 48 0 34 0.00 34 49 0 27 0.00 27 50 0 41 0.00 41 51 0 25 0.00 25 52 0 23 0.00 23 53 0 38 0.00 38 54 0 26 0.00 26 55 0 32 0.00 32 56 0 24 0.00 24 57 0 35 0.00 35 58 0 30 0.00 30 59 0 39 0.00 39 60 0 27 0.00 27 61 0 30 0.00 30 62 0 27 0.00 27 63 0 29 0.00 29 64 0 22 0.00 22 65 1 33 2.94 34 66 0 21 0.00 21 67 1 20 4.76 21 68 0 25 0.00 25 69 0 24 0.00 24 70 0 27 0.00 27 71 0 32 0.00 32 72 0 20 0.00 20 73 0 20 0.00 20 74 0 26 0.00 26 75 0 33 0.00 33 76 0 20 0.00 20 77 0 24 0.00 24 78 0 23 0.00 23 79 1 29 3.33 30 80 0 14 0.00 14 81 0 33 0.00 33 82 0 22 0.00 22 83 0 34 0.00 34 84 1 23 4.17 24 85 0 31 0.00 31 86 0 23 0.00 23 87 0 21 0.00 21 88 0 20 0.00 20 89 0 28 0.00 28 90 0 20 0.00 20 91 0 26 0.00 26 92 0 17 0.00 17 93 0 18 0.00 18 94 0 15 0.00 15 95 0 21 0.00 21 96 0 21 0.00 21 97 0 21 0.00 21 98 0 25 0.00 25 99 0 10 0.00 10 100 1 15 6.25 16 101 0 23 0.00 23 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 19 58.70 46 2 22 8 73.33 30 3 6 13 31.58 19 4 3 26 10.34 29 5 1 31 3.12 32 6 2 15 11.76 17 7 0 37 0.00 37 8 0 32 0.00 32 9 1 29 3.33 30 10 0 29 0.00 29 11 1 32 3.03 33 12 1 32 3.03 33 13 0 31 0.00 31 14 0 28 0.00 28 15 0 30 0.00 30 16 0 27 0.00 27 17 0 26 0.00 26 18 0 26 0.00 26 19 1 28 3.45 29 20 1 29 3.33 30 21 0 25 0.00 25 22 0 33 0.00 33 23 1 27 3.57 28 24 0 21 0.00 21 25 1 25 3.85 26 26 0 37 0.00 37 27 0 31 0.00 31 28 0 29 0.00 29 29 0 41 0.00 41 30 1 29 3.33 30 31 0 33 0.00 33 32 0 28 0.00 28 33 0 32 0.00 32 34 0 35 0.00 35 35 0 31 0.00 31 36 1 34 2.86 35 37 0 41 0.00 41 38 0 26 0.00 26 39 2 36 5.26 38 40 1 42 2.33 43 41 0 39 0.00 39 42 0 31 0.00 31 43 1 30 3.23 31 44 0 29 0.00 29 45 1 20 4.76 21 46 0 25 0.00 25 47 1 25 3.85 26 48 0 31 0.00 31 49 0 32 0.00 32 50 0 26 0.00 26 51 2 18 10.00 20 52 0 33 0.00 33 53 0 32 0.00 32 54 0 36 0.00 36 55 0 34 0.00 34 56 0 39 0.00 39 57 0 29 0.00 29 58 0 27 0.00 27 59 0 27 0.00 27 60 0 30 0.00 30 61 0 27 0.00 27 62 1 31 3.12 32 63 0 25 0.00 25 64 0 29 0.00 29 65 0 27 0.00 27 66 0 22 0.00 22 67 0 28 0.00 28 68 0 27 0.00 27 69 0 25 0.00 25 70 0 27 0.00 27 71 0 22 0.00 22 72 1 22 4.35 23 73 0 23 0.00 23 74 1 26 3.70 27 75 0 23 0.00 23 76 0 26 0.00 26 77 3 23 11.54 26 78 0 27 0.00 27 79 0 21 0.00 21 80 0 29 0.00 29 81 0 21 0.00 21 82 1 25 3.85 26 83 0 32 0.00 32 84 0 22 0.00 22 85 0 17 0.00 17 86 0 21 0.00 21 87 0 23 0.00 23 88 2 20 9.09 22 89 0 16 0.00 16 90 2 16 11.11 18 91 2 20 9.09 22 92 1 18 5.26 19 93 2 10 16.67 12 94 0 22 0.00 22 95 0 29 0.00 29 96 1 21 4.55 22 97 0 20 0.00 20 98 0 15 0.00 15 99 0 11 0.00 11 100 0 13 0.00 13 101 1 17 5.56 18 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 11 15.38 13 2 4 10 28.57 14 3 1 30 3.23 31 4 0 20 0.00 20 5 1 28 3.45 29 6 3 41 6.82 44 7 0 35 0.00 35 8 0 45 0.00 45 9 0 34 0.00 34 10 0 40 0.00 40 11 0 41 0.00 41 12 0 40 0.00 40 13 0 38 0.00 38 14 0 52 0.00 52 15 0 40 0.00 40 16 0 47 0.00 47 17 0 53 0.00 53 18 0 51 0.00 51 19 0 48 0.00 48 20 0 43 0.00 43 21 0 43 0.00 43 22 1 57 1.72 58 23 0 45 0.00 45 24 1 56 1.75 57 25 1 41 2.38 42 26 0 52 0.00 52 27 0 29 0.00 29 28 0 51 0.00 51 29 2 61 3.17 63 30 0 46 0.00 46 31 0 57 0.00 57 32 0 49 0.00 49 33 0 42 0.00 42 34 0 44 0.00 44 35 0 42 0.00 42 36 0 30 0.00 30 37 0 26 0.00 26 38 0 40 0.00 40 39 0 36 0.00 36 40 0 38 0.00 38 41 0 43 0.00 43 42 1 48 2.04 49 43 0 42 0.00 42 44 0 38 0.00 38 45 0 46 0.00 46 46 1 53 1.85 54 47 0 53 0.00 53 48 0 41 0.00 41 49 1 46 2.13 47 50 0 56 0.00 56 51 0 57 0.00 57 52 0 38 0.00 38 53 0 51 0.00 51 54 1 37 2.63 38 55 0 47 0.00 47 56 1 38 2.56 39 57 0 34 0.00 34 58 0 43 0.00 43 59 0 39 0.00 39 60 0 45 0.00 45 61 0 44 0.00 44 62 0 46 0.00 46 63 0 27 0.00 27 64 0 45 0.00 45 65 0 40 0.00 40 66 0 31 0.00 31 67 0 36 0.00 36 68 0 40 0.00 40 69 1 31 3.12 32 70 2 31 6.06 33 71 0 40 0.00 40 72 0 46 0.00 46 73 0 37 0.00 37 74 0 35 0.00 35 75 0 40 0.00 40 76 0 45 0.00 45 77 0 43 0.00 43 78 0 49 0.00 49 79 0 40 0.00 40 80 0 44 0.00 44 81 0 49 0.00 49 82 0 32 0.00 32 83 0 24 0.00 24 84 0 29 0.00 29 85 0 28 0.00 28 86 1 28 3.45 29 87 0 35 0.00 35 88 0 31 0.00 31 89 0 25 0.00 25 90 0 37 0.00 37 91 0 38 0.00 38 92 1 33 2.94 34 93 0 30 0.00 30 94 0 36 0.00 36 95 0 28 0.00 28 96 0 18 0.00 18 97 0 20 0.00 20 98 0 29 0.00 29 99 0 18 0.00 18 100 0 20 0.00 20 101 0 32 0.00 32 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 14 33.33 21 2 3 30 9.09 33 3 1 21 4.55 22 4 1 17 5.56 18 5 0 22 0.00 22 6 2 13 13.33 15 7 0 19 0.00 19 8 0 10 0.00 10 9 0 26 0.00 26 10 0 21 0.00 21 11 0 15 0.00 15 12 0 19 0.00 19 13 0 14 0.00 14 14 0 10 0.00 10 15 0 20 0.00 20 16 0 9 0.00 9 17 0 16 0.00 16 18 1 17 5.56 18 19 0 19 0.00 19 20 0 14 0.00 14 21 0 18 0.00 18 22 0 18 0.00 18 23 0 15 0.00 15 24 0 12 0.00 12 25 0 19 0.00 19 26 0 13 0.00 13 27 0 20 0.00 20 28 0 10 0.00 10 29 0 12 0.00 12 30 0 15 0.00 15 31 0 12 0.00 12 32 0 21 0.00 21 33 0 17 0.00 17 34 0 10 0.00 10 35 0 11 0.00 11 36 0 3 0.00 3 37 0 11 0.00 11 38 0 6 0.00 6 39 0 9 0.00 9 40 0 8 0.00 8 41 0 8 0.00 8 42 1 11 8.33 12 43 0 12 0.00 12 44 0 11 0.00 11 45 0 3 0.00 3 46 0 5 0.00 5 47 0 13 0.00 13 48 0 7 0.00 7 49 0 7 0.00 7 50 0 10 0.00 10 51 0 9 0.00 9 52 0 10 0.00 10 53 0 5 0.00 5 54 0 8 0.00 8 55 0 6 0.00 6 56 0 5 0.00 5 57 0 5 0.00 5 58 0 8 0.00 8 59 0 9 0.00 9 60 0 10 0.00 10 61 0 8 0.00 8 62 0 6 0.00 6 63 0 6 0.00 6 64 0 6 0.00 6 65 0 8 0.00 8 66 0 6 0.00 6 67 0 8 0.00 8 68 0 8 0.00 8 69 0 12 0.00 12 70 0 4 0.00 4 71 0 8 0.00 8 72 0 7 0.00 7 73 0 5 0.00 5 74 0 5 0.00 5 75 0 15 0.00 15 76 0 4 0.00 4 77 0 12 0.00 12 78 0 5 0.00 5 79 0 9 0.00 9 80 0 8 0.00 8 81 0 7 0.00 7 82 0 6 0.00 6 83 0 7 0.00 7 84 0 5 0.00 5 85 0 3 0.00 3 86 0 7 0.00 7 87 0 6 0.00 6 88 0 1 0.00 1 89 0 4 0.00 4 90 0 3 0.00 3 91 0 6 0.00 6 92 0 5 0.00 5 93 0 5 0.00 5 94 0 4 0.00 4 95 0 4 0.00 4 96 0 5 0.00 5 97 0 2 0.00 2 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 7 36.36 11 2 2 14 12.50 16 3 2 20 9.09 22 4 4 22 15.38 26 5 0 30 0.00 30 6 0 31 0.00 31 7 0 20 0.00 20 8 0 13 0.00 13 9 0 17 0.00 17 10 0 19 0.00 19 11 0 20 0.00 20 12 0 16 0.00 16 13 0 13 0.00 13 14 0 15 0.00 15 15 0 21 0.00 21 16 1 15 6.25 16 17 0 12 0.00 12 18 0 10 0.00 10 19 0 13 0.00 13 20 0 25 0.00 25 21 0 9 0.00 9 22 0 19 0.00 19 23 0 15 0.00 15 24 0 11 0.00 11 25 0 10 0.00 10 26 0 11 0.00 11 27 0 14 0.00 14 28 0 13 0.00 13 29 0 17 0.00 17 30 0 12 0.00 12 31 0 8 0.00 8 32 0 8 0.00 8 33 0 12 0.00 12 34 0 16 0.00 16 35 0 8 0.00 8 36 0 10 0.00 10 37 0 7 0.00 7 38 0 11 0.00 11 39 0 8 0.00 8 40 0 7 0.00 7 41 0 15 0.00 15 42 0 7 0.00 7 43 0 4 0.00 4 44 0 9 0.00 9 45 0 8 0.00 8 46 0 9 0.00 9 47 0 7 0.00 7 48 0 11 0.00 11 49 0 14 0.00 14 50 0 8 0.00 8 51 0 11 0.00 11 52 1 12 7.69 13 53 0 11 0.00 11 54 0 11 0.00 11 55 1 7 12.50 8 56 1 8 11.11 9 57 0 10 0.00 10 58 0 8 0.00 8 59 1 8 11.11 9 60 0 7 0.00 7 61 0 13 0.00 13 62 0 6 0.00 6 63 0 9 0.00 9 64 0 10 0.00 10 65 2 6 25.00 8 66 0 9 0.00 9 67 0 7 0.00 7 68 3 6 33.33 9 69 0 8 0.00 8 70 0 6 0.00 6 71 0 15 0.00 15 72 0 5 0.00 5 73 0 7 0.00 7 74 0 10 0.00 10 75 0 6 0.00 6 76 0 4 0.00 4 77 0 6 0.00 6 78 1 11 8.33 12 79 0 3 0.00 3 80 0 6 0.00 6 81 0 4 0.00 4 82 1 6 14.29 7 83 0 8 0.00 8 84 0 9 0.00 9 85 0 10 0.00 10 86 0 6 0.00 6 87 0 12 0.00 12 88 0 3 0.00 3 89 0 10 0.00 10 90 0 5 0.00 5 91 1 1 50.00 2 92 0 4 0.00 4 93 0 6 0.00 6 94 0 6 0.00 6 95 0 4 0.00 4 96 0 4 0.00 4 97 0 3 0.00 3 98 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 9 10.00 10 2 3 12 20.00 15 3 1 6 14.29 7 4 2 3 40.00 5 5 0 19 0.00 19 6 0 19 0.00 19 7 0 21 0.00 21 8 0 42 0.00 42 9 0 28 0.00 28 10 0 20 0.00 20 11 0 27 0.00 27 12 0 22 0.00 22 13 0 27 0.00 27 14 0 26 0.00 26 15 0 29 0.00 29 16 0 23 0.00 23 17 1 29 3.33 30 18 0 24 0.00 24 19 0 22 0.00 22 20 0 11 0.00 11 21 0 20 0.00 20 22 0 20 0.00 20 23 0 35 0.00 35 24 0 25 0.00 25 25 0 19 0.00 19 26 0 23 0.00 23 27 0 17 0.00 17 28 0 20 0.00 20 29 0 20 0.00 20 30 0 16 0.00 16 31 1 26 3.70 27 32 0 21 0.00 21 33 0 30 0.00 30 34 0 16 0.00 16 35 0 14 0.00 14 36 0 25 0.00 25 37 0 18 0.00 18 38 0 23 0.00 23 39 0 17 0.00 17 40 0 13 0.00 13 41 0 16 0.00 16 42 1 17 5.56 18 43 0 23 0.00 23 44 0 17 0.00 17 45 0 20 0.00 20 46 0 15 0.00 15 47 0 15 0.00 15 48 0 20 0.00 20 49 0 27 0.00 27 50 0 15 0.00 15 51 0 15 0.00 15 52 0 15 0.00 15 53 0 19 0.00 19 54 0 21 0.00 21 55 0 18 0.00 18 56 0 16 0.00 16 57 0 19 0.00 19 58 0 5 0.00 5 59 1 15 6.25 16 60 0 12 0.00 12 61 0 19 0.00 19 62 0 11 0.00 11 63 0 12 0.00 12 64 0 13 0.00 13 65 0 9 0.00 9 66 0 15 0.00 15 67 0 12 0.00 12 68 0 15 0.00 15 69 0 13 0.00 13 70 0 11 0.00 11 71 0 17 0.00 17 72 0 22 0.00 22 73 0 12 0.00 12 74 0 16 0.00 16 75 0 10 0.00 10 76 0 10 0.00 10 77 0 14 0.00 14 78 0 17 0.00 17 79 0 21 0.00 21 80 0 9 0.00 9 81 0 11 0.00 11 82 0 10 0.00 10 83 0 11 0.00 11 84 0 12 0.00 12 85 0 11 0.00 11 86 0 11 0.00 11 87 0 8 0.00 8 88 0 9 0.00 9 89 0 8 0.00 8 90 0 14 0.00 14 91 0 11 0.00 11 92 0 16 0.00 16 93 0 14 0.00 14 94 0 8 0.00 8 95 0 10 0.00 10 96 0 7 0.00 7 97 0 7 0.00 7 98 0 14 0.00 14