/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
472
Pairs without alignments under any condition
99528
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19671
Methylated C's in CpG context
43
Methylated C's in CHG context
178
Methylated C's in CHH context
51
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
5723
Unmethylated C's in CHG context
5518
Unmethylated C's in CHH context
8158
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
0.7%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
315
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
157
original bottom strand
Deduplication
Alignments analysed
472
Unique alignments
454
Duplicates removed
18
Duplicated alignments were found at 13 different positions
