EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 485 lines in total Total number of methylation call strings processed: 970 Final Cytosine Methylation Report ================================= Total number of C's analysed: 13549 Total methylated C's in CpG context: 42 Total methylated C's in CHG context: 117 Total methylated C's in CHH context: 51 Total C to T conversions in CpG context: 3848 Total C to T conversions in CHG context: 3831 Total C to T conversions in CHH context: 5660 C methylated in CpG context: 1.1% C methylated in CHG context: 3.0% C methylated in CHH context: 0.9%