CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 56 1.75 57 2 0 62 0.00 62 3 2 52 3.70 54 4 0 39 0.00 39 5 1 32 3.03 33 6 0 32 0.00 32 7 0 19 0.00 19 8 0 33 0.00 33 9 1 36 2.70 37 10 0 34 0.00 34 11 0 33 0.00 33 12 0 35 0.00 35 13 0 24 0.00 24 14 0 20 0.00 20 15 0 27 0.00 27 16 0 31 0.00 31 17 0 32 0.00 32 18 0 34 0.00 34 19 0 34 0.00 34 20 0 29 0.00 29 21 0 26 0.00 26 22 0 34 0.00 34 23 0 25 0.00 25 24 0 37 0.00 37 25 0 33 0.00 33 26 0 33 0.00 33 27 0 29 0.00 29 28 0 31 0.00 31 29 0 35 0.00 35 30 1 34 2.86 35 31 0 31 0.00 31 32 0 24 0.00 24 33 1 30 3.23 31 34 1 27 3.57 28 35 0 36 0.00 36 36 0 30 0.00 30 37 0 29 0.00 29 38 0 27 0.00 27 39 0 31 0.00 31 40 0 22 0.00 22 41 0 29 0.00 29 42 0 29 0.00 29 43 0 31 0.00 31 44 0 30 0.00 30 45 0 25 0.00 25 46 0 36 0.00 36 47 0 27 0.00 27 48 0 26 0.00 26 49 0 36 0.00 36 50 0 35 0.00 35 51 0 40 0.00 40 52 1 30 3.23 31 53 0 37 0.00 37 54 0 25 0.00 25 55 0 22 0.00 22 56 0 23 0.00 23 57 0 34 0.00 34 58 1 36 2.70 37 59 2 31 6.06 33 60 0 37 0.00 37 61 0 26 0.00 26 62 0 24 0.00 24 63 1 27 3.57 28 64 0 25 0.00 25 65 0 26 0.00 26 66 1 23 4.17 24 67 0 21 0.00 21 68 1 26 3.70 27 69 1 30 3.23 31 70 0 25 0.00 25 71 1 31 3.12 32 72 0 26 0.00 26 73 0 28 0.00 28 74 0 26 0.00 26 75 0 26 0.00 26 76 0 28 0.00 28 77 0 21 0.00 21 78 0 19 0.00 19 79 0 25 0.00 25 80 1 13 7.14 14 81 1 32 3.03 33 82 1 22 4.35 23 83 0 18 0.00 18 84 0 30 0.00 30 85 1 22 4.35 23 86 0 21 0.00 21 87 0 21 0.00 21 88 1 23 4.17 24 89 0 16 0.00 16 90 0 19 0.00 19 91 0 26 0.00 26 92 0 15 0.00 15 93 1 21 4.55 22 94 0 15 0.00 15 95 0 11 0.00 11 96 0 27 0.00 27 97 0 16 0.00 16 98 0 24 0.00 24 99 0 26 0.00 26 100 1 18 5.26 19 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30 16 65.22 46 2 13 11 54.17 24 3 5 25 16.67 30 4 2 32 5.88 34 5 2 20 9.09 22 6 1 18 5.26 19 7 0 41 0.00 41 8 1 41 2.38 42 9 0 30 0.00 30 10 0 24 0.00 24 11 0 27 0.00 27 12 0 25 0.00 25 13 0 24 0.00 24 14 1 28 3.45 29 15 2 30 6.25 32 16 1 37 2.63 38 17 1 34 2.86 35 18 1 19 5.00 20 19 1 31 3.12 32 20 0 25 0.00 25 21 0 36 0.00 36 22 0 39 0.00 39 23 0 20 0.00 20 24 0 33 0.00 33 25 0 32 0.00 32 26 0 24 0.00 24 27 1 36 2.70 37 28 1 41 2.38 42 29 1 45 2.17 46 30 1 26 3.70 27 31 1 35 2.78 36 32 2 28 6.67 30 33 0 31 0.00 31 34 0 33 0.00 33 35 1 38 2.56 39 36 1 42 2.33 43 37 0 30 0.00 30 38 0 32 0.00 32 39 0 25 0.00 25 40 0 38 0.00 38 41 0 35 0.00 35 42 1 30 3.23 31 43 2 21 8.70 23 44 0 21 0.00 21 45 1 29 3.33 30 46 0 26 0.00 26 47 0 21 0.00 21 48 1 30 3.23 31 49 0 30 0.00 30 50 0 35 0.00 35 51 0 29 0.00 29 52 0 25 0.00 25 53 0 33 0.00 33 54 0 31 0.00 31 55 0 29 0.00 29 56 0 30 0.00 30 57 0 31 0.00 31 58 0 29 0.00 29 59 0 31 0.00 31 60 1 36 2.70 37 61 0 27 0.00 27 62 1 38 2.56 39 63 0 33 0.00 33 64 0 31 0.00 31 65 1 34 2.86 35 66 0 30 0.00 30 67 0 36 0.00 36 68 0 28 0.00 28 69 0 25 0.00 25 70 0 39 0.00 39 71 0 21 0.00 21 72 0 34 0.00 34 73 0 28 0.00 28 74 0 22 0.00 22 75 0 23 0.00 23 76 0 22 0.00 22 77 1 21 4.55 22 78 0 25 0.00 25 79 0 29 0.00 29 80 0 34 0.00 34 81 0 25 0.00 25 82 0 29 0.00 29 83 1 30 3.23 31 84 0 25 0.00 25 85 0 19 0.00 19 86 0 12 0.00 12 87 0 26 0.00 26 88 0 17 0.00 17 89 0 23 0.00 23 90 3 15 16.67 18 91 1 18 5.26 19 92 0 21 0.00 21 93 3 16 15.79 19 94 0 19 0.00 19 95 1 19 5.00 20 96 1 17 5.56 18 97 0 14 0.00 14 98 2 19 9.52 21 99 0 16 0.00 16 100 2 17 10.53 19 101 0 17 0.00 17 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9 11 45.00 20 2 2 14 12.50 16 3 1 25 3.85 26 4 1 21 4.55 22 5 0 30 0.00 30 6 1 23 4.17 24 7 1 38 2.56 39 8 0 47 0.00 47 9 0 34 0.00 34 10 0 34 0.00 34 11 1 33 2.94 34 12 1 47 2.08 48 13 0 47 0.00 47 14 0 48 0.00 48 15 0 57 0.00 57 16 0 43 0.00 43 17 1 50 1.96 51 18 2 58 3.33 60 19 0 43 0.00 43 20 0 46 0.00 46 21 0 45 0.00 45 22 0 47 0.00 47 23 1 52 1.89 53 24 0 65 0.00 65 25 0 65 0.00 65 26 2 56 3.45 58 27 1 62 1.59 63 28 0 58 0.00 58 29 0 51 0.00 51 30 0 42 0.00 42 31 0 52 0.00 52 32 0 61 0.00 61 33 0 52 0.00 52 34 0 42 0.00 42 35 0 51 0.00 51 36 1 43 2.27 44 37 0 53 0.00 53 38 0 42 0.00 42 39 1 36 2.70 37 40 0 52 0.00 52 41 0 55 0.00 55 42 0 39 0.00 39 43 0 42 0.00 42 44 1 48 2.04 49 45 1 51 1.92 52 46 0 65 0.00 65 47 0 48 0.00 48 48 0 51 0.00 51 49 0 39 0.00 39 50 0 44 0.00 44 51 0 51 0.00 51 52 0 54 0.00 54 53 0 50 0.00 50 54 0 49 0.00 49 55 0 46 0.00 46 56 0 42 0.00 42 57 0 42 0.00 42 58 1 31 3.12 32 59 0 43 0.00 43 60 2 41 4.65 43 61 0 38 0.00 38 62 1 39 2.50 40 63 0 51 0.00 51 64 0 37 0.00 37 65 0 34 0.00 34 66 0 40 0.00 40 67 0 49 0.00 49 68 0 32 0.00 32 69 1 33 2.94 34 70 0 37 0.00 37 71 0 42 0.00 42 72 1 34 2.86 35 73 0 39 0.00 39 74 0 43 0.00 43 75 1 41 2.38 42 76 0 38 0.00 38 77 0 43 0.00 43 78 0 50 0.00 50 79 1 40 2.44 41 80 0 33 0.00 33 81 0 40 0.00 40 82 0 33 0.00 33 83 1 30 3.23 31 84 1 22 4.35 23 85 0 28 0.00 28 86 1 26 3.70 27 87 1 27 3.57 28 88 0 44 0.00 44 89 1 35 2.78 36 90 0 34 0.00 34 91 0 35 0.00 35 92 0 39 0.00 39 93 0 37 0.00 37 94 0 35 0.00 35 95 0 34 0.00 34 96 0 31 0.00 31 97 0 27 0.00 27 98 0 29 0.00 29 99 0 16 0.00 16 100 1 15 6.25 16 101 0 36 0.00 36 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 13 27.78 18 2 3 21 12.50 24 3 4 23 14.81 27 4 1 25 3.85 26 5 1 28 3.45 29 6 0 17 0.00 17 7 0 18 0.00 18 8 0 21 0.00 21 9 0 21 0.00 21 10 0 17 0.00 17 11 1 18 5.26 19 12 0 19 0.00 19 13 0 15 0.00 15 14 0 14 0.00 14 15 0 14 0.00 14 16 0 18 0.00 18 17 0 14 0.00 14 18 0 18 0.00 18 19 0 12 0.00 12 20 0 17 0.00 17 21 0 21 0.00 21 22 0 12 0.00 12 23 0 16 0.00 16 24 0 13 0.00 13 25 0 22 0.00 22 26 0 15 0.00 15 27 0 14 0.00 14 28 0 10 0.00 10 29 0 13 0.00 13 30 0 10 0.00 10 31 0 23 0.00 23 32 0 12 0.00 12 33 0 13 0.00 13 34 0 13 0.00 13 35 0 15 0.00 15 36 0 10 0.00 10 37 0 15 0.00 15 38 0 10 0.00 10 39 0 11 0.00 11 40 0 6 0.00 6 41 0 7 0.00 7 42 0 13 0.00 13 43 0 5 0.00 5 44 0 16 0.00 16 45 0 7 0.00 7 46 0 12 0.00 12 47 0 10 0.00 10 48 0 10 0.00 10 49 0 13 0.00 13 50 0 10 0.00 10 51 0 5 0.00 5 52 0 14 0.00 14 53 0 6 0.00 6 54 0 7 0.00 7 55 0 9 0.00 9 56 0 6 0.00 6 57 0 1 0.00 1 58 0 7 0.00 7 59 0 6 0.00 6 60 0 4 0.00 4 61 0 7 0.00 7 62 0 4 0.00 4 63 0 10 0.00 10 64 0 12 0.00 12 65 0 7 0.00 7 66 0 4 0.00 4 67 0 9 0.00 9 68 0 7 0.00 7 69 0 7 0.00 7 70 0 6 0.00 6 71 0 2 0.00 2 72 0 5 0.00 5 73 2 6 25.00 8 74 0 5 0.00 5 75 0 11 0.00 11 76 0 8 0.00 8 77 0 9 0.00 9 78 0 2 0.00 2 79 0 7 0.00 7 80 0 9 0.00 9 81 0 4 0.00 4 82 0 3 0.00 3 83 0 1 0.00 1 84 0 7 0.00 7 85 0 3 0.00 3 86 0 3 0.00 3 87 0 6 0.00 6 88 0 3 0.00 3 89 0 5 0.00 5 90 0 1 0.00 1 91 0 2 0.00 2 92 0 1 0.00 1 93 0 2 0.00 2 94 0 0 0 95 1 5 16.67 6 96 0 6 0.00 6 97 0 1 0.00 1 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 12 7.69 13 2 1 19 5.00 20 3 5 22 18.52 27 4 4 17 19.05 21 5 1 28 3.45 29 6 0 29 0.00 29 7 0 14 0.00 14 8 0 24 0.00 24 9 0 23 0.00 23 10 0 25 0.00 25 11 1 10 9.09 11 12 0 12 0.00 12 13 1 15 6.25 16 14 0 19 0.00 19 15 0 20 0.00 20 16 0 14 0.00 14 17 0 17 0.00 17 18 0 22 0.00 22 19 0 16 0.00 16 20 0 11 0.00 11 21 0 16 0.00 16 22 0 29 0.00 29 23 0 11 0.00 11 24 0 11 0.00 11 25 2 10 16.67 12 26 0 18 0.00 18 27 0 13 0.00 13 28 0 11 0.00 11 29 1 14 6.67 15 30 0 7 0.00 7 31 0 15 0.00 15 32 0 14 0.00 14 33 0 17 0.00 17 34 0 14 0.00 14 35 0 9 0.00 9 36 0 11 0.00 11 37 0 9 0.00 9 38 0 8 0.00 8 39 0 11 0.00 11 40 0 13 0.00 13 41 0 11 0.00 11 42 0 11 0.00 11 43 0 10 0.00 10 44 0 10 0.00 10 45 0 13 0.00 13 46 0 11 0.00 11 47 0 14 0.00 14 48 0 14 0.00 14 49 0 11 0.00 11 50 0 13 0.00 13 51 1 16 5.88 17 52 0 11 0.00 11 53 0 13 0.00 13 54 0 10 0.00 10 55 0 11 0.00 11 56 1 5 16.67 6 57 0 7 0.00 7 58 0 11 0.00 11 59 0 11 0.00 11 60 1 8 11.11 9 61 0 6 0.00 6 62 0 6 0.00 6 63 0 6 0.00 6 64 1 9 10.00 10 65 1 8 11.11 9 66 0 6 0.00 6 67 0 6 0.00 6 68 0 10 0.00 10 69 0 7 0.00 7 70 1 6 14.29 7 71 0 9 0.00 9 72 0 3 0.00 3 73 0 7 0.00 7 74 0 7 0.00 7 75 0 6 0.00 6 76 0 5 0.00 5 77 0 4 0.00 4 78 0 6 0.00 6 79 0 6 0.00 6 80 1 6 14.29 7 81 0 3 0.00 3 82 0 6 0.00 6 83 0 4 0.00 4 84 0 6 0.00 6 85 0 7 0.00 7 86 0 6 0.00 6 87 0 3 0.00 3 88 0 2 0.00 2 89 0 3 0.00 3 90 0 4 0.00 4 91 0 7 0.00 7 92 0 1 0.00 1 93 0 4 0.00 4 94 0 1 0.00 1 95 0 2 0.00 2 96 0 5 0.00 5 97 0 8 0.00 8 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 16 11.11 18 2 1 9 10.00 10 3 0 8 0.00 8 4 1 8 11.11 9 5 0 11 0.00 11 6 0 15 0.00 15 7 0 29 0.00 29 8 0 35 0.00 35 9 0 30 0.00 30 10 1 28 3.45 29 11 0 34 0.00 34 12 0 26 0.00 26 13 1 25 3.85 26 14 0 29 0.00 29 15 0 36 0.00 36 16 0 26 0.00 26 17 0 22 0.00 22 18 0 22 0.00 22 19 0 18 0.00 18 20 0 11 0.00 11 21 0 17 0.00 17 22 0 21 0.00 21 23 0 24 0.00 24 24 0 22 0.00 22 25 0 16 0.00 16 26 0 20 0.00 20 27 1 16 5.88 17 28 0 25 0.00 25 29 0 34 0.00 34 30 0 12 0.00 12 31 0 18 0.00 18 32 0 18 0.00 18 33 0 23 0.00 23 34 0 21 0.00 21 35 0 12 0.00 12 36 0 25 0.00 25 37 0 14 0.00 14 38 0 20 0.00 20 39 0 27 0.00 27 40 0 24 0.00 24 41 0 10 0.00 10 42 0 10 0.00 10 43 0 19 0.00 19 44 0 18 0.00 18 45 0 15 0.00 15 46 0 22 0.00 22 47 0 14 0.00 14 48 0 18 0.00 18 49 0 14 0.00 14 50 0 12 0.00 12 51 0 12 0.00 12 52 0 17 0.00 17 53 0 10 0.00 10 54 0 24 0.00 24 55 0 15 0.00 15 56 1 13 7.14 14 57 0 20 0.00 20 58 0 12 0.00 12 59 0 15 0.00 15 60 0 20 0.00 20 61 0 19 0.00 19 62 0 5 0.00 5 63 0 16 0.00 16 64 0 15 0.00 15 65 0 14 0.00 14 66 0 11 0.00 11 67 0 6 0.00 6 68 0 10 0.00 10 69 0 14 0.00 14 70 0 10 0.00 10 71 0 12 0.00 12 72 0 10 0.00 10 73 0 11 0.00 11 74 0 5 0.00 5 75 0 14 0.00 14 76 0 9 0.00 9 77 0 7 0.00 7 78 0 10 0.00 10 79 0 13 0.00 13 80 0 12 0.00 12 81 0 8 0.00 8 82 0 8 0.00 8 83 1 3 25.00 4 84 0 8 0.00 8 85 0 10 0.00 10 86 0 10 0.00 10 87 0 10 0.00 10 88 0 6 0.00 6 89 0 4 0.00 4 90 0 5 0.00 5 91 0 8 0.00 8 92 0 6 0.00 6 93 0 8 0.00 8 94 0 8 0.00 8 95 0 8 0.00 8 96 0 4 0.00 4 97 0 4 0.00 4 98 0 9 0.00 9