/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
509
Pairs without alignments under any condition
99491
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
20623
Methylated C's in CpG context
66
Methylated C's in CHG context
185
Methylated C's in CHH context
72
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
5916
Unmethylated C's in CHG context
5838
Unmethylated C's in CHH context
8546
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
0.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
338
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
171
original bottom strand
Deduplication
Alignments analysed
509
Unique alignments
485
Duplicates removed
24
Duplicated alignments were found at 17 different positions
