EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 1741 lines in total Total number of methylation call strings processed: 3482 Final Cytosine Methylation Report ================================= Total number of C's analysed: 53002 Total methylated C's in CpG context: 144 Total methylated C's in CHG context: 442 Total methylated C's in CHH context: 176 Total C to T conversions in CpG context: 15363 Total C to T conversions in CHG context: 14896 Total C to T conversions in CHH context: 21981 C methylated in CpG context: 0.9% C methylated in CHG context: 2.9% C methylated in CHH context: 0.8%