/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
1825
Pairs without alignments under any condition
98175
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
78115
Methylated C's in CpG context
207
Methylated C's in CHG context
655
Methylated C's in CHH context
232
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
22679
Unmethylated C's in CHG context
22265
Unmethylated C's in CHH context
32077
Unmethylated C's in Unknown context
30
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
0.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1217
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
608
original bottom strand
Deduplication
Alignments analysed
1825
Unique alignments
1741
Duplicates removed
84
Duplicated alignments were found at 67 different positions
