CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 73 3.95 76 2 0 81 0.00 81 3 0 87 0.00 87 4 0 45 0.00 45 5 0 57 0.00 57 6 0 33 0.00 33 7 0 35 0.00 35 8 1 32 3.03 33 9 0 46 0.00 46 10 0 40 0.00 40 11 1 45 2.17 46 12 0 29 0.00 29 13 0 31 0.00 31 14 0 51 0.00 51 15 1 46 2.13 47 16 0 41 0.00 41 17 0 45 0.00 45 18 0 47 0.00 47 19 1 41 2.38 42 20 0 44 0.00 44 21 0 60 0.00 60 22 0 44 0.00 44 23 0 42 0.00 42 24 0 45 0.00 45 25 0 50 0.00 50 26 1 43 2.27 44 27 0 39 0.00 39 28 0 49 0.00 49 29 0 52 0.00 52 30 1 47 2.08 48 31 1 53 1.85 54 32 0 44 0.00 44 33 0 46 0.00 46 34 0 37 0.00 37 35 0 50 0.00 50 36 0 42 0.00 42 37 0 35 0.00 35 38 1 40 2.44 41 39 0 46 0.00 46 40 0 45 0.00 45 41 0 35 0.00 35 42 0 46 0.00 46 43 0 40 0.00 40 44 1 44 2.22 45 45 0 40 0.00 40 46 0 31 0.00 31 47 0 37 0.00 37 48 0 34 0.00 34 49 0 49 0.00 49 50 2 44 4.35 46 51 1 57 1.72 58 52 1 51 1.92 52 53 1 40 2.44 41 54 0 47 0.00 47 55 0 33 0.00 33 56 1 47 2.08 48 57 0 56 0.00 56 58 0 57 0.00 57 59 1 61 1.61 62 60 0 44 0.00 44 61 0 31 0.00 31 62 0 33 0.00 33 63 0 35 0.00 35 64 0 45 0.00 45 65 0 32 0.00 32 66 1 38 2.56 39 67 0 47 0.00 47 68 0 39 0.00 39 69 1 35 2.78 36 70 1 31 3.12 32 71 0 28 0.00 28 72 0 40 0.00 40 73 0 36 0.00 36 74 0 42 0.00 42 75 0 30 0.00 30 76 0 38 0.00 38 77 0 33 0.00 33 78 1 42 2.33 43 79 0 32 0.00 32 80 1 34 2.86 35 81 1 46 2.13 47 82 0 39 0.00 39 83 0 37 0.00 37 84 0 33 0.00 33 85 0 37 0.00 37 86 0 33 0.00 33 87 0 30 0.00 30 88 1 34 2.86 35 89 0 26 0.00 26 90 0 30 0.00 30 91 0 30 0.00 30 92 0 27 0.00 27 93 1 30 3.23 31 94 1 27 3.57 28 95 0 27 0.00 27 96 1 32 3.03 33 97 1 34 2.86 35 98 0 30 0.00 30 99 0 29 0.00 29 100 0 32 0.00 32 101 1 23 4.17 24 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39 26 60.00 65 2 21 24 46.67 45 3 12 27 30.77 39 4 9 35 20.45 44 5 1 41 2.38 42 6 0 29 0.00 29 7 4 52 7.14 56 8 2 43 4.44 45 9 1 42 2.33 43 10 0 36 0.00 36 11 0 49 0.00 49 12 0 49 0.00 49 13 0 33 0.00 33 14 0 37 0.00 37 15 0 26 0.00 26 16 1 36 2.70 37 17 1 37 2.63 38 18 1 41 2.38 42 19 0 39 0.00 39 20 0 45 0.00 45 21 1 41 2.38 42 22 1 39 2.50 40 23 1 40 2.44 41 24 0 49 0.00 49 25 0 60 0.00 60 26 0 42 0.00 42 27 0 59 0.00 59 28 1 57 1.72 58 29 1 49 2.00 50 30 2 35 5.41 37 31 2 51 3.77 53 32 0 53 0.00 53 33 1 47 2.08 48 34 0 57 0.00 57 35 0 36 0.00 36 36 0 55 0.00 55 37 0 46 0.00 46 38 0 56 0.00 56 39 0 39 0.00 39 40 0 39 0.00 39 41 0 65 0.00 65 42 0 60 0.00 60 43 0 46 0.00 46 44 0 42 0.00 42 45 1 31 3.12 32 46 0 49 0.00 49 47 0 43 0.00 43 48 0 45 0.00 45 49 0 35 0.00 35 50 3 29 9.38 32 51 0 38 0.00 38 52 3 39 7.14 42 53 0 40 0.00 40 54 1 46 2.13 47 55 0 31 0.00 31 56 0 60 0.00 60 57 2 37 5.13 39 58 1 42 2.33 43 59 0 45 0.00 45 60 1 45 2.17 46 61 0 43 0.00 43 62 0 32 0.00 32 63 1 52 1.89 53 64 1 36 2.70 37 65 0 32 0.00 32 66 0 42 0.00 42 67 0 34 0.00 34 68 1 31 3.12 32 69 0 36 0.00 36 70 0 43 0.00 43 71 0 37 0.00 37 72 0 44 0.00 44 73 0 27 0.00 27 74 3 31 8.82 34 75 1 38 2.56 39 76 1 32 3.03 33 77 2 31 6.06 33 78 1 33 2.94 34 79 0 51 0.00 51 80 2 37 5.13 39 81 0 44 0.00 44 82 0 25 0.00 25 83 2 34 5.56 36 84 2 37 5.13 39 85 0 31 0.00 31 86 1 28 3.45 29 87 1 33 2.94 34 88 0 34 0.00 34 89 1 31 3.12 32 90 0 21 0.00 21 91 3 32 8.57 35 92 1 36 2.70 37 93 1 22 4.35 23 94 0 33 0.00 33 95 0 30 0.00 30 96 0 24 0.00 24 97 1 28 3.45 29 98 0 24 0.00 24 99 0 19 0.00 19 100 1 17 5.56 18 101 2 18 10.00 20 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12 4 75.00 16 2 5 14 26.32 19 3 4 40 9.09 44 4 0 40 0.00 40 5 2 52 3.70 54 6 0 42 0.00 42 7 0 68 0.00 68 8 0 61 0.00 61 9 0 60 0.00 60 10 0 52 0.00 52 11 0 55 0.00 55 12 0 52 0.00 52 13 0 49 0.00 49 14 0 59 0.00 59 15 0 64 0.00 64 16 0 82 0.00 82 17 0 80 0.00 80 18 0 83 0.00 83 19 0 69 0.00 69 20 1 63 1.56 64 21 0 74 0.00 74 22 1 64 1.54 65 23 0 64 0.00 64 24 0 84 0.00 84 25 1 76 1.30 77 26 1 85 1.16 86 27 0 83 0.00 83 28 0 97 0.00 97 29 0 75 0.00 75 30 0 81 0.00 81 31 0 75 0.00 75 32 0 85 0.00 85 33 0 72 0.00 72 34 0 61 0.00 61 35 0 75 0.00 75 36 0 64 0.00 64 37 0 57 0.00 57 38 0 85 0.00 85 39 0 62 0.00 62 40 0 66 0.00 66 41 0 63 0.00 63 42 0 73 0.00 73 43 0 63 0.00 63 44 1 77 1.28 78 45 1 88 1.12 89 46 0 84 0.00 84 47 1 59 1.67 60 48 0 71 0.00 71 49 0 70 0.00 70 50 0 78 0.00 78 51 2 73 2.67 75 52 0 67 0.00 67 53 0 78 0.00 78 54 0 76 0.00 76 55 0 63 0.00 63 56 0 60 0.00 60 57 1 74 1.33 75 58 0 56 0.00 56 59 0 60 0.00 60 60 0 71 0.00 71 61 0 61 0.00 61 62 1 61 1.61 62 63 1 61 1.61 62 64 0 60 0.00 60 65 0 63 0.00 63 66 0 61 0.00 61 67 0 56 0.00 56 68 0 57 0.00 57 69 0 47 0.00 47 70 0 73 0.00 73 71 0 60 0.00 60 72 0 55 0.00 55 73 0 55 0.00 55 74 0 57 0.00 57 75 1 64 1.54 65 76 0 60 0.00 60 77 0 65 0.00 65 78 1 56 1.75 57 79 0 63 0.00 63 80 0 56 0.00 56 81 2 57 3.39 59 82 0 48 0.00 48 83 0 52 0.00 52 84 0 50 0.00 50 85 0 56 0.00 56 86 0 40 0.00 40 87 2 43 4.44 45 88 0 50 0.00 50 89 0 45 0.00 45 90 0 51 0.00 51 91 1 49 2.00 50 92 1 47 2.08 48 93 0 46 0.00 46 94 0 35 0.00 35 95 0 35 0.00 35 96 1 26 3.70 27 97 0 41 0.00 41 98 0 41 0.00 41 99 0 37 0.00 37 100 0 31 0.00 31 101 1 46 2.13 47 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 19 0.00 19 2 4 21 16.00 25 3 5 30 14.29 35 4 2 36 5.26 38 5 0 50 0.00 50 6 0 25 0.00 25 7 0 25 0.00 25 8 0 19 0.00 19 9 0 19 0.00 19 10 0 27 0.00 27 11 1 21 4.55 22 12 0 23 0.00 23 13 0 23 0.00 23 14 0 16 0.00 16 15 0 27 0.00 27 16 0 17 0.00 17 17 0 27 0.00 27 18 0 19 0.00 19 19 1 22 4.35 23 20 0 24 0.00 24 21 0 23 0.00 23 22 1 13 7.14 14 23 0 23 0.00 23 24 0 18 0.00 18 25 1 23 4.17 24 26 1 21 4.55 22 27 0 19 0.00 19 28 0 23 0.00 23 29 0 11 0.00 11 30 0 24 0.00 24 31 0 24 0.00 24 32 0 17 0.00 17 33 0 15 0.00 15 34 0 16 0.00 16 35 0 19 0.00 19 36 0 16 0.00 16 37 0 16 0.00 16 38 1 14 6.67 15 39 0 9 0.00 9 40 0 7 0.00 7 41 0 10 0.00 10 42 0 15 0.00 15 43 0 15 0.00 15 44 0 13 0.00 13 45 0 10 0.00 10 46 0 20 0.00 20 47 0 17 0.00 17 48 0 8 0.00 8 49 0 9 0.00 9 50 0 12 0.00 12 51 0 12 0.00 12 52 0 11 0.00 11 53 0 7 0.00 7 54 0 14 0.00 14 55 0 6 0.00 6 56 0 6 0.00 6 57 0 14 0.00 14 58 1 7 12.50 8 59 0 14 0.00 14 60 0 13 0.00 13 61 0 11 0.00 11 62 0 14 0.00 14 63 1 9 10.00 10 64 0 15 0.00 15 65 0 14 0.00 14 66 0 8 0.00 8 67 0 9 0.00 9 68 0 11 0.00 11 69 0 14 0.00 14 70 0 7 0.00 7 71 0 6 0.00 6 72 0 4 0.00 4 73 0 6 0.00 6 74 0 7 0.00 7 75 0 8 0.00 8 76 0 5 0.00 5 77 0 9 0.00 9 78 0 7 0.00 7 79 0 11 0.00 11 80 0 10 0.00 10 81 0 6 0.00 6 82 0 9 0.00 9 83 0 4 0.00 4 84 0 7 0.00 7 85 0 7 0.00 7 86 0 2 0.00 2 87 0 5 0.00 5 88 0 4 0.00 4 89 0 3 0.00 3 90 0 5 0.00 5 91 0 6 0.00 6 92 0 4 0.00 4 93 0 8 0.00 8 94 0 9 0.00 9 95 0 5 0.00 5 96 0 3 0.00 3 97 0 3 0.00 3 98 0 7 0.00 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 10 16.67 12 2 5 23 17.86 28 3 1 28 3.45 29 4 3 14 17.65 17 5 1 32 3.03 33 6 0 32 0.00 32 7 0 19 0.00 19 8 0 34 0.00 34 9 0 29 0.00 29 10 1 20 4.76 21 11 0 17 0.00 17 12 0 13 0.00 13 13 1 21 4.55 22 14 0 26 0.00 26 15 0 29 0.00 29 16 0 18 0.00 18 17 0 33 0.00 33 18 0 16 0.00 16 19 0 18 0.00 18 20 1 25 3.85 26 21 0 15 0.00 15 22 0 20 0.00 20 23 0 23 0.00 23 24 0 17 0.00 17 25 0 11 0.00 11 26 0 17 0.00 17 27 0 18 0.00 18 28 0 18 0.00 18 29 0 18 0.00 18 30 0 13 0.00 13 31 1 13 7.14 14 32 0 12 0.00 12 33 0 31 0.00 31 34 0 23 0.00 23 35 0 11 0.00 11 36 0 25 0.00 25 37 0 19 0.00 19 38 0 14 0.00 14 39 1 15 6.25 16 40 0 18 0.00 18 41 0 11 0.00 11 42 0 11 0.00 11 43 0 10 0.00 10 44 1 14 6.67 15 45 0 12 0.00 12 46 0 9 0.00 9 47 1 19 5.00 20 48 0 22 0.00 22 49 0 10 0.00 10 50 0 12 0.00 12 51 0 7 0.00 7 52 0 15 0.00 15 53 0 14 0.00 14 54 0 10 0.00 10 55 0 13 0.00 13 56 0 14 0.00 14 57 0 7 0.00 7 58 0 9 0.00 9 59 0 13 0.00 13 60 0 13 0.00 13 61 0 9 0.00 9 62 0 11 0.00 11 63 0 13 0.00 13 64 0 7 0.00 7 65 0 14 0.00 14 66 0 9 0.00 9 67 0 9 0.00 9 68 1 10 9.09 11 69 1 8 11.11 9 70 0 15 0.00 15 71 1 12 7.69 13 72 0 3 0.00 3 73 1 5 16.67 6 74 0 10 0.00 10 75 2 4 33.33 6 76 0 1 0.00 1 77 0 4 0.00 4 78 0 14 0.00 14 79 0 8 0.00 8 80 0 10 0.00 10 81 0 4 0.00 4 82 0 10 0.00 10 83 0 7 0.00 7 84 0 6 0.00 6 85 0 9 0.00 9 86 0 11 0.00 11 87 1 7 12.50 8 88 0 3 0.00 3 89 0 3 0.00 3 90 0 3 0.00 3 91 0 7 0.00 7 92 0 6 0.00 6 93 0 5 0.00 5 94 0 4 0.00 4 95 0 5 0.00 5 96 0 7 0.00 7 97 0 3 0.00 3 98 0 6 0.00 6 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 9 40.00 15 2 5 14 26.32 19 3 4 7 36.36 11 4 3 7 30.00 10 5 0 20 0.00 20 6 0 26 0.00 26 7 0 38 0.00 38 8 0 44 0.00 44 9 0 42 0.00 42 10 0 42 0.00 42 11 0 41 0.00 41 12 0 32 0.00 32 13 0 33 0.00 33 14 0 44 0.00 44 15 0 49 0.00 49 16 0 32 0.00 32 17 0 39 0.00 39 18 0 46 0.00 46 19 0 34 0.00 34 20 0 17 0.00 17 21 0 24 0.00 24 22 0 35 0.00 35 23 0 26 0.00 26 24 0 27 0.00 27 25 0 24 0.00 24 26 0 19 0.00 19 27 0 31 0.00 31 28 1 35 2.78 36 29 0 30 0.00 30 30 0 16 0.00 16 31 0 18 0.00 18 32 0 19 0.00 19 33 0 33 0.00 33 34 1 33 2.94 34 35 0 21 0.00 21 36 0 35 0.00 35 37 0 24 0.00 24 38 0 28 0.00 28 39 1 25 3.85 26 40 0 23 0.00 23 41 0 20 0.00 20 42 0 20 0.00 20 43 1 24 4.00 25 44 0 33 0.00 33 45 0 23 0.00 23 46 1 19 5.00 20 47 0 26 0.00 26 48 0 23 0.00 23 49 0 33 0.00 33 50 0 29 0.00 29 51 0 24 0.00 24 52 0 24 0.00 24 53 0 29 0.00 29 54 0 21 0.00 21 55 0 26 0.00 26 56 0 21 0.00 21 57 0 25 0.00 25 58 0 23 0.00 23 59 0 25 0.00 25 60 0 21 0.00 21 61 0 25 0.00 25 62 0 14 0.00 14 63 0 29 0.00 29 64 0 29 0.00 29 65 0 17 0.00 17 66 1 14 6.67 15 67 0 12 0.00 12 68 0 17 0.00 17 69 0 22 0.00 22 70 0 18 0.00 18 71 0 24 0.00 24 72 0 18 0.00 18 73 0 15 0.00 15 74 0 18 0.00 18 75 0 16 0.00 16 76 0 13 0.00 13 77 0 9 0.00 9 78 0 16 0.00 16 79 1 20 4.76 21 80 0 20 0.00 20 81 0 9 0.00 9 82 0 23 0.00 23 83 0 22 0.00 22 84 0 14 0.00 14 85 0 18 0.00 18 86 0 13 0.00 13 87 0 15 0.00 15 88 0 16 0.00 16 89 0 6 0.00 6 90 0 10 0.00 10 91 0 12 0.00 12 92 1 13 7.14 14 93 0 13 0.00 13 94 0 8 0.00 8 95 0 10 0.00 10 96 0 9 0.00 9 97 0 12 0.00 12 98 0 14 0.00 14