/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
737
Pairs without alignments under any condition
99263
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
29996
Methylated C's in CpG context
81
Methylated C's in CHG context
261
Methylated C's in CHH context
100
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
8622
Unmethylated C's in CHG context
8210
Unmethylated C's in CHH context
12722
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
0.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
487
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
250
original bottom strand
Deduplication
Alignments analysed
737
Unique alignments
693
Duplicates removed
44
Duplicated alignments were found at 33 different positions
