EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 324 lines in total Total number of methylation call strings processed: 648 Final Cytosine Methylation Report ================================= Total number of C's analysed: 8929 Total methylated C's in CpG context: 25 Total methylated C's in CHG context: 77 Total methylated C's in CHH context: 24 Total C to T conversions in CpG context: 2521 Total C to T conversions in CHG context: 2422 Total C to T conversions in CHH context: 3860 C methylated in CpG context: 1.0% C methylated in CHG context: 3.1% C methylated in CHH context: 0.6%