CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 30 3.23 31 2 1 53 1.85 54 3 0 35 0.00 35 4 0 18 0.00 18 5 2 21 8.70 23 6 0 14 0.00 14 7 0 24 0.00 24 8 0 15 0.00 15 9 0 19 0.00 19 10 0 13 0.00 13 11 0 26 0.00 26 12 0 18 0.00 18 13 0 16 0.00 16 14 0 24 0.00 24 15 0 14 0.00 14 16 0 21 0.00 21 17 0 23 0.00 23 18 0 23 0.00 23 19 0 23 0.00 23 20 1 25 3.85 26 21 0 22 0.00 22 22 0 29 0.00 29 23 0 21 0.00 21 24 0 19 0.00 19 25 0 23 0.00 23 26 0 20 0.00 20 27 2 20 9.09 22 28 0 19 0.00 19 29 0 23 0.00 23 30 0 23 0.00 23 31 0 19 0.00 19 32 0 13 0.00 13 33 0 19 0.00 19 34 0 16 0.00 16 35 0 25 0.00 25 36 0 28 0.00 28 37 0 16 0.00 16 38 1 26 3.70 27 39 0 25 0.00 25 40 0 21 0.00 21 41 0 21 0.00 21 42 1 22 4.35 23 43 0 20 0.00 20 44 0 17 0.00 17 45 0 22 0.00 22 46 0 21 0.00 21 47 0 17 0.00 17 48 0 20 0.00 20 49 0 20 0.00 20 50 0 23 0.00 23 51 0 22 0.00 22 52 0 16 0.00 16 53 0 17 0.00 17 54 1 15 6.25 16 55 0 21 0.00 21 56 0 18 0.00 18 57 0 15 0.00 15 58 0 25 0.00 25 59 1 17 5.56 18 60 0 26 0.00 26 61 0 17 0.00 17 62 1 18 5.26 19 63 0 26 0.00 26 64 0 28 0.00 28 65 0 17 0.00 17 66 0 14 0.00 14 67 0 17 0.00 17 68 1 12 7.69 13 69 0 13 0.00 13 70 0 21 0.00 21 71 0 22 0.00 22 72 1 13 7.14 14 73 0 12 0.00 12 74 0 20 0.00 20 75 0 22 0.00 22 76 0 17 0.00 17 77 0 14 0.00 14 78 0 18 0.00 18 79 0 14 0.00 14 80 0 16 0.00 16 81 0 17 0.00 17 82 0 15 0.00 15 83 0 19 0.00 19 84 0 9 0.00 9 85 0 14 0.00 14 86 0 4 0.00 4 87 0 21 0.00 21 88 0 17 0.00 17 89 0 13 0.00 13 90 0 15 0.00 15 91 0 10 0.00 10 92 0 8 0.00 8 93 0 17 0.00 17 94 0 12 0.00 12 95 0 6 0.00 6 96 0 11 0.00 11 97 0 12 0.00 12 98 0 11 0.00 11 99 0 17 0.00 17 100 1 19 5.00 20 101 1 16 5.88 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18 17 51.43 35 2 14 3 82.35 17 3 5 15 25.00 20 4 2 23 8.00 25 5 0 21 0.00 21 6 0 14 0.00 14 7 1 19 5.00 20 8 0 34 0.00 34 9 0 12 0.00 12 10 1 18 5.26 19 11 0 25 0.00 25 12 0 9 0.00 9 13 1 22 4.35 23 14 0 20 0.00 20 15 0 15 0.00 15 16 0 23 0.00 23 17 1 18 5.26 19 18 0 22 0.00 22 19 0 19 0.00 19 20 0 21 0.00 21 21 3 15 16.67 18 22 0 19 0.00 19 23 1 13 7.14 14 24 0 14 0.00 14 25 0 22 0.00 22 26 0 19 0.00 19 27 0 20 0.00 20 28 0 28 0.00 28 29 0 25 0.00 25 30 0 18 0.00 18 31 1 14 6.67 15 32 0 24 0.00 24 33 0 29 0.00 29 34 0 20 0.00 20 35 0 22 0.00 22 36 0 25 0.00 25 37 1 22 4.35 23 38 0 25 0.00 25 39 0 28 0.00 28 40 0 20 0.00 20 41 1 16 5.88 17 42 0 29 0.00 29 43 0 18 0.00 18 44 1 17 5.56 18 45 0 15 0.00 15 46 0 22 0.00 22 47 1 17 5.56 18 48 0 18 0.00 18 49 0 23 0.00 23 50 0 19 0.00 19 51 1 14 6.67 15 52 1 23 4.17 24 53 0 20 0.00 20 54 1 16 5.88 17 55 1 18 5.26 19 56 0 12 0.00 12 57 0 17 0.00 17 58 1 21 4.55 22 59 0 14 0.00 14 60 0 20 0.00 20 61 0 17 0.00 17 62 0 20 0.00 20 63 1 19 5.00 20 64 0 15 0.00 15 65 0 19 0.00 19 66 1 22 4.35 23 67 0 19 0.00 19 68 0 18 0.00 18 69 1 14 6.67 15 70 0 18 0.00 18 71 0 18 0.00 18 72 0 22 0.00 22 73 0 19 0.00 19 74 0 18 0.00 18 75 0 14 0.00 14 76 0 17 0.00 17 77 0 15 0.00 15 78 0 18 0.00 18 79 0 9 0.00 9 80 0 16 0.00 16 81 0 22 0.00 22 82 0 10 0.00 10 83 0 15 0.00 15 84 0 15 0.00 15 85 0 9 0.00 9 86 0 16 0.00 16 87 0 16 0.00 16 88 1 16 5.88 17 89 0 14 0.00 14 90 0 13 0.00 13 91 0 11 0.00 11 92 2 19 9.52 21 93 1 12 7.69 13 94 0 13 0.00 13 95 0 13 0.00 13 96 0 11 0.00 11 97 0 11 0.00 11 98 1 12 7.69 13 99 1 8 11.11 9 100 0 9 0.00 9 101 0 16 0.00 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 5 58.33 12 2 2 7 22.22 9 3 1 16 5.88 17 4 0 15 0.00 15 5 0 18 0.00 18 6 0 22 0.00 22 7 0 26 0.00 26 8 0 27 0.00 27 9 0 24 0.00 24 10 0 18 0.00 18 11 0 32 0.00 32 12 0 37 0.00 37 13 0 26 0.00 26 14 0 31 0.00 31 15 0 38 0.00 38 16 0 31 0.00 31 17 0 32 0.00 32 18 0 29 0.00 29 19 0 38 0.00 38 20 0 35 0.00 35 21 0 28 0.00 28 22 0 42 0.00 42 23 0 27 0.00 27 24 0 35 0.00 35 25 0 39 0.00 39 26 0 50 0.00 50 27 0 37 0.00 37 28 0 36 0.00 36 29 0 35 0.00 35 30 0 32 0.00 32 31 0 48 0.00 48 32 0 50 0.00 50 33 0 30 0.00 30 34 0 36 0.00 36 35 0 33 0.00 33 36 0 35 0.00 35 37 0 25 0.00 25 38 0 28 0.00 28 39 0 28 0.00 28 40 0 26 0.00 26 41 0 31 0.00 31 42 0 21 0.00 21 43 0 35 0.00 35 44 0 29 0.00 29 45 0 43 0.00 43 46 0 42 0.00 42 47 0 42 0.00 42 48 1 36 2.70 37 49 0 26 0.00 26 50 0 28 0.00 28 51 0 45 0.00 45 52 0 37 0.00 37 53 0 35 0.00 35 54 0 27 0.00 27 55 0 31 0.00 31 56 0 37 0.00 37 57 0 32 0.00 32 58 0 23 0.00 23 59 0 25 0.00 25 60 0 26 0.00 26 61 1 26 3.70 27 62 1 33 2.94 34 63 0 36 0.00 36 64 0 15 0.00 15 65 0 24 0.00 24 66 1 33 2.94 34 67 0 27 0.00 27 68 0 24 0.00 24 69 0 23 0.00 23 70 0 27 0.00 27 71 0 25 0.00 25 72 0 23 0.00 23 73 0 26 0.00 26 74 1 32 3.03 33 75 0 25 0.00 25 76 0 19 0.00 19 77 0 29 0.00 29 78 0 17 0.00 17 79 0 24 0.00 24 80 0 25 0.00 25 81 0 19 0.00 19 82 0 25 0.00 25 83 0 26 0.00 26 84 0 25 0.00 25 85 0 25 0.00 25 86 0 23 0.00 23 87 0 19 0.00 19 88 0 22 0.00 22 89 1 14 6.67 15 90 1 18 5.26 19 91 0 19 0.00 19 92 0 25 0.00 25 93 0 18 0.00 18 94 0 19 0.00 19 95 0 16 0.00 16 96 0 18 0.00 18 97 0 18 0.00 18 98 1 13 7.14 14 99 0 11 0.00 11 100 0 10 0.00 10 101 0 21 0.00 21 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 6 25.00 8 2 3 13 18.75 16 3 1 17 5.56 18 4 0 11 0.00 11 5 0 27 0.00 27 6 0 5 0.00 5 7 0 6 0.00 6 8 0 16 0.00 16 9 0 9 0.00 9 10 0 11 0.00 11 11 0 11 0.00 11 12 0 4 0.00 4 13 0 9 0.00 9 14 1 4 20.00 5 15 0 13 0.00 13 16 0 14 0.00 14 17 0 9 0.00 9 18 0 11 0.00 11 19 0 14 0.00 14 20 0 13 0.00 13 21 0 10 0.00 10 22 0 9 0.00 9 23 0 7 0.00 7 24 1 7 12.50 8 25 0 9 0.00 9 26 0 6 0.00 6 27 0 4 0.00 4 28 0 6 0.00 6 29 1 4 20.00 5 30 0 6 0.00 6 31 0 6 0.00 6 32 0 10 0.00 10 33 0 2 0.00 2 34 0 4 0.00 4 35 0 2 0.00 2 36 0 9 0.00 9 37 0 9 0.00 9 38 0 11 0.00 11 39 0 5 0.00 5 40 0 5 0.00 5 41 0 8 0.00 8 42 0 10 0.00 10 43 0 9 0.00 9 44 0 10 0.00 10 45 0 3 0.00 3 46 0 4 0.00 4 47 0 6 0.00 6 48 0 6 0.00 6 49 0 6 0.00 6 50 0 4 0.00 4 51 0 4 0.00 4 52 0 6 0.00 6 53 0 4 0.00 4 54 0 1 0.00 1 55 0 2 0.00 2 56 0 6 0.00 6 57 0 5 0.00 5 58 0 5 0.00 5 59 0 7 0.00 7 60 0 2 0.00 2 61 0 3 0.00 3 62 0 3 0.00 3 63 0 8 0.00 8 64 0 9 0.00 9 65 0 3 0.00 3 66 0 8 0.00 8 67 0 7 0.00 7 68 0 4 0.00 4 69 0 5 0.00 5 70 0 5 0.00 5 71 0 1 0.00 1 72 0 1 0.00 1 73 0 7 0.00 7 74 0 5 0.00 5 75 0 6 0.00 6 76 0 3 0.00 3 77 0 6 0.00 6 78 0 3 0.00 3 79 0 1 0.00 1 80 0 4 0.00 4 81 0 4 0.00 4 82 0 3 0.00 3 83 0 3 0.00 3 84 0 3 0.00 3 85 0 2 0.00 2 86 0 4 0.00 4 87 0 6 0.00 6 88 0 6 0.00 6 89 0 4 0.00 4 90 0 3 0.00 3 91 0 0 0 92 0 1 0.00 1 93 0 2 0.00 2 94 0 2 0.00 2 95 0 5 0.00 5 96 0 3 0.00 3 97 0 2 0.00 2 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 10 0.00 10 2 1 4 20.00 5 3 2 16 11.11 18 4 3 9 25.00 12 5 0 10 0.00 10 6 0 22 0.00 22 7 0 2 0.00 2 8 0 13 0.00 13 9 0 14 0.00 14 10 0 14 0.00 14 11 0 8 0.00 8 12 0 15 0.00 15 13 0 7 0.00 7 14 0 10 0.00 10 15 0 10 0.00 10 16 1 9 10.00 10 17 0 10 0.00 10 18 1 6 14.29 7 19 0 8 0.00 8 20 0 8 0.00 8 21 0 9 0.00 9 22 0 6 0.00 6 23 0 9 0.00 9 24 0 8 0.00 8 25 0 5 0.00 5 26 0 10 0.00 10 27 0 12 0.00 12 28 0 10 0.00 10 29 0 11 0.00 11 30 0 7 0.00 7 31 0 7 0.00 7 32 0 6 0.00 6 33 0 13 0.00 13 34 0 9 0.00 9 35 0 2 0.00 2 36 0 5 0.00 5 37 0 9 0.00 9 38 0 5 0.00 5 39 0 9 0.00 9 40 0 5 0.00 5 41 0 9 0.00 9 42 0 9 0.00 9 43 0 11 0.00 11 44 0 6 0.00 6 45 0 6 0.00 6 46 0 9 0.00 9 47 0 6 0.00 6 48 0 7 0.00 7 49 0 7 0.00 7 50 0 7 0.00 7 51 1 9 10.00 10 52 1 8 11.11 9 53 0 8 0.00 8 54 0 5 0.00 5 55 0 3 0.00 3 56 0 7 0.00 7 57 0 4 0.00 4 58 0 6 0.00 6 59 0 10 0.00 10 60 0 7 0.00 7 61 0 2 0.00 2 62 0 4 0.00 4 63 0 5 0.00 5 64 0 7 0.00 7 65 0 2 0.00 2 66 0 6 0.00 6 67 0 7 0.00 7 68 1 7 12.50 8 69 0 1 0.00 1 70 0 4 0.00 4 71 0 8 0.00 8 72 0 3 0.00 3 73 0 1 0.00 1 74 0 2 0.00 2 75 0 3 0.00 3 76 0 1 0.00 1 77 0 1 0.00 1 78 0 4 0.00 4 79 0 5 0.00 5 80 0 4 0.00 4 81 0 3 0.00 3 82 0 1 0.00 1 83 0 2 0.00 2 84 0 6 0.00 6 85 0 5 0.00 5 86 0 2 0.00 2 87 0 3 0.00 3 88 0 3 0.00 3 89 0 5 0.00 5 90 0 2 0.00 2 91 0 7 0.00 7 92 0 2 0.00 2 93 0 2 0.00 2 94 0 2 0.00 2 95 0 2 0.00 2 96 0 1 0.00 1 97 0 0 0 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 1 6 14.29 7 3 1 7 12.50 8 4 1 7 12.50 8 5 0 12 0.00 12 6 0 14 0.00 14 7 0 13 0.00 13 8 0 18 0.00 18 9 0 18 0.00 18 10 0 17 0.00 17 11 0 18 0.00 18 12 0 21 0.00 21 13 0 21 0.00 21 14 1 15 6.25 16 15 0 18 0.00 18 16 0 13 0.00 13 17 0 22 0.00 22 18 0 15 0.00 15 19 0 13 0.00 13 20 0 8 0.00 8 21 0 11 0.00 11 22 0 19 0.00 19 23 0 16 0.00 16 24 0 16 0.00 16 25 0 9 0.00 9 26 0 16 0.00 16 27 0 15 0.00 15 28 0 16 0.00 16 29 0 14 0.00 14 30 0 11 0.00 11 31 0 12 0.00 12 32 1 9 10.00 10 33 0 11 0.00 11 34 0 14 0.00 14 35 0 13 0.00 13 36 0 16 0.00 16 37 0 9 0.00 9 38 0 13 0.00 13 39 0 18 0.00 18 40 0 13 0.00 13 41 0 11 0.00 11 42 0 6 0.00 6 43 0 7 0.00 7 44 0 8 0.00 8 45 0 12 0.00 12 46 0 13 0.00 13 47 0 15 0.00 15 48 0 11 0.00 11 49 0 6 0.00 6 50 0 9 0.00 9 51 0 10 0.00 10 52 0 12 0.00 12 53 0 9 0.00 9 54 0 18 0.00 18 55 0 7 0.00 7 56 0 10 0.00 10 57 0 15 0.00 15 58 0 3 0.00 3 59 0 7 0.00 7 60 0 7 0.00 7 61 0 8 0.00 8 62 0 4 0.00 4 63 0 8 0.00 8 64 0 6 0.00 6 65 0 14 0.00 14 66 0 9 0.00 9 67 0 8 0.00 8 68 0 9 0.00 9 69 0 12 0.00 12 70 0 9 0.00 9 71 0 13 0.00 13 72 0 10 0.00 10 73 0 10 0.00 10 74 0 11 0.00 11 75 0 6 0.00 6 76 0 11 0.00 11 77 0 15 0.00 15 78 0 9 0.00 9 79 0 9 0.00 9 80 0 8 0.00 8 81 0 13 0.00 13 82 0 4 0.00 4 83 0 10 0.00 10 84 0 7 0.00 7 85 0 7 0.00 7 86 0 8 0.00 8 87 0 10 0.00 10 88 0 4 0.00 4 89 0 0 0 90 0 9 0.00 9 91 0 8 0.00 8 92 0 15 0.00 15 93 0 7 0.00 7 94 0 13 0.00 13 95 1 9 10.00 10 96 0 8 0.00 8 97 0 7 0.00 7 98 0 7 0.00 7