/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
340
Pairs without alignments under any condition
99660
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
13846
Methylated C's in CpG context
37
Methylated C's in CHG context
114
Methylated C's in CHH context
34
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
3990
Unmethylated C's in CHG context
3772
Unmethylated C's in CHH context
5899
Unmethylated C's in Unknown context
1
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
220
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
120
original bottom strand
Deduplication
Alignments analysed
340
Unique alignments
324
Duplicates removed
16
Duplicated alignments were found at 11 different positions
