CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 48 5.88 51 2 1 56 1.75 57 3 0 57 0.00 57 4 0 36 0.00 36 5 0 22 0.00 22 6 1 31 3.12 32 7 1 30 3.23 31 8 0 25 0.00 25 9 0 28 0.00 28 10 1 34 2.86 35 11 1 29 3.33 30 12 0 35 0.00 35 13 0 27 0.00 27 14 1 32 3.03 33 15 0 29 0.00 29 16 0 33 0.00 33 17 0 28 0.00 28 18 1 35 2.78 36 19 1 29 3.33 30 20 2 24 7.69 26 21 0 31 0.00 31 22 1 29 3.33 30 23 0 29 0.00 29 24 0 45 0.00 45 25 0 35 0.00 35 26 0 24 0.00 24 27 1 32 3.03 33 28 0 38 0.00 38 29 0 29 0.00 29 30 0 32 0.00 32 31 0 28 0.00 28 32 0 29 0.00 29 33 0 33 0.00 33 34 0 28 0.00 28 35 0 31 0.00 31 36 0 46 0.00 46 37 0 25 0.00 25 38 0 33 0.00 33 39 0 39 0.00 39 40 0 34 0.00 34 41 0 28 0.00 28 42 1 36 2.70 37 43 0 33 0.00 33 44 0 23 0.00 23 45 0 32 0.00 32 46 0 34 0.00 34 47 0 24 0.00 24 48 0 30 0.00 30 49 2 33 5.71 35 50 0 34 0.00 34 51 0 36 0.00 36 52 0 32 0.00 32 53 1 32 3.03 33 54 0 32 0.00 32 55 0 31 0.00 31 56 0 22 0.00 22 57 0 35 0.00 35 58 0 33 0.00 33 59 0 35 0.00 35 60 1 31 3.12 32 61 0 31 0.00 31 62 1 35 2.78 36 63 0 34 0.00 34 64 0 23 0.00 23 65 0 33 0.00 33 66 1 33 2.94 34 67 0 33 0.00 33 68 0 25 0.00 25 69 0 33 0.00 33 70 0 21 0.00 21 71 1 24 4.00 25 72 1 27 3.57 28 73 0 28 0.00 28 74 0 29 0.00 29 75 0 26 0.00 26 76 0 36 0.00 36 77 0 11 0.00 11 78 0 26 0.00 26 79 0 17 0.00 17 80 1 32 3.03 33 81 0 29 0.00 29 82 1 27 3.57 28 83 0 27 0.00 27 84 0 28 0.00 28 85 0 28 0.00 28 86 0 26 0.00 26 87 1 20 4.76 21 88 0 22 0.00 22 89 0 26 0.00 26 90 0 23 0.00 23 91 0 19 0.00 19 92 0 21 0.00 21 93 0 31 0.00 31 94 1 17 5.56 18 95 0 23 0.00 23 96 0 19 0.00 19 97 0 21 0.00 21 98 1 13 7.14 14 99 1 21 4.55 22 100 0 19 0.00 19 101 0 34 0.00 34 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30 17 63.83 47 2 17 25 40.48 42 3 5 20 20.00 25 4 7 16 30.43 23 5 1 26 3.70 27 6 2 24 7.69 26 7 0 30 0.00 30 8 1 39 2.50 40 9 1 28 3.45 29 10 0 17 0.00 17 11 2 41 4.65 43 12 0 20 0.00 20 13 0 33 0.00 33 14 1 30 3.23 31 15 0 29 0.00 29 16 0 29 0.00 29 17 0 32 0.00 32 18 0 31 0.00 31 19 0 29 0.00 29 20 1 34 2.86 35 21 0 40 0.00 40 22 0 28 0.00 28 23 0 35 0.00 35 24 1 29 3.33 30 25 0 21 0.00 21 26 0 35 0.00 35 27 1 36 2.70 37 28 0 40 0.00 40 29 0 38 0.00 38 30 1 33 2.94 34 31 0 31 0.00 31 32 0 35 0.00 35 33 1 38 2.56 39 34 0 39 0.00 39 35 1 34 2.86 35 36 1 31 3.12 32 37 0 31 0.00 31 38 0 31 0.00 31 39 0 35 0.00 35 40 1 30 3.23 31 41 0 39 0.00 39 42 0 51 0.00 51 43 0 27 0.00 27 44 0 24 0.00 24 45 1 34 2.86 35 46 1 24 4.00 25 47 1 30 3.23 31 48 0 30 0.00 30 49 2 27 6.90 29 50 0 24 0.00 24 51 0 29 0.00 29 52 0 34 0.00 34 53 0 26 0.00 26 54 0 27 0.00 27 55 0 34 0.00 34 56 1 34 2.86 35 57 0 30 0.00 30 58 1 31 3.12 32 59 0 24 0.00 24 60 0 38 0.00 38 61 1 35 2.78 36 62 0 31 0.00 31 63 0 31 0.00 31 64 0 27 0.00 27 65 0 30 0.00 30 66 1 25 3.85 26 67 2 37 5.13 39 68 0 30 0.00 30 69 0 31 0.00 31 70 3 40 6.98 43 71 0 39 0.00 39 72 0 32 0.00 32 73 1 36 2.70 37 74 1 29 3.33 30 75 0 34 0.00 34 76 0 20 0.00 20 77 0 26 0.00 26 78 0 32 0.00 32 79 1 25 3.85 26 80 0 26 0.00 26 81 2 32 5.88 34 82 0 21 0.00 21 83 0 24 0.00 24 84 0 28 0.00 28 85 0 22 0.00 22 86 0 16 0.00 16 87 1 25 3.85 26 88 0 20 0.00 20 89 0 28 0.00 28 90 0 16 0.00 16 91 1 23 4.17 24 92 1 25 3.85 26 93 1 24 4.00 25 94 0 18 0.00 18 95 0 19 0.00 19 96 0 22 0.00 22 97 0 14 0.00 14 98 2 20 9.09 22 99 0 12 0.00 12 100 0 14 0.00 14 101 0 17 0.00 17 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 10 44.44 18 2 3 9 25.00 12 3 2 25 7.41 27 4 0 26 0.00 26 5 1 34 2.86 35 6 1 31 3.12 32 7 0 42 0.00 42 8 1 42 2.33 43 9 0 32 0.00 32 10 1 40 2.44 41 11 0 48 0.00 48 12 0 38 0.00 38 13 1 46 2.13 47 14 0 55 0.00 55 15 2 48 4.00 50 16 0 42 0.00 42 17 0 51 0.00 51 18 0 50 0.00 50 19 0 47 0.00 47 20 1 46 2.13 47 21 0 44 0.00 44 22 0 54 0.00 54 23 0 42 0.00 42 24 0 56 0.00 56 25 0 52 0.00 52 26 0 63 0.00 63 27 0 59 0.00 59 28 0 53 0.00 53 29 0 41 0.00 41 30 1 50 1.96 51 31 0 58 0.00 58 32 0 68 0.00 68 33 2 46 4.17 48 34 0 61 0.00 61 35 0 48 0.00 48 36 0 47 0.00 47 37 0 51 0.00 51 38 0 46 0.00 46 39 0 52 0.00 52 40 0 45 0.00 45 41 0 45 0.00 45 42 2 49 3.92 51 43 0 55 0.00 55 44 1 57 1.72 58 45 0 54 0.00 54 46 1 62 1.59 63 47 0 47 0.00 47 48 0 55 0.00 55 49 0 61 0.00 61 50 0 52 0.00 52 51 0 50 0.00 50 52 0 64 0.00 64 53 1 58 1.69 59 54 1 50 1.96 51 55 1 54 1.82 55 56 0 43 0.00 43 57 0 44 0.00 44 58 1 42 2.33 43 59 0 48 0.00 48 60 0 58 0.00 58 61 0 45 0.00 45 62 0 48 0.00 48 63 0 46 0.00 46 64 0 41 0.00 41 65 0 43 0.00 43 66 0 45 0.00 45 67 0 48 0.00 48 68 0 49 0.00 49 69 0 44 0.00 44 70 0 39 0.00 39 71 0 34 0.00 34 72 0 51 0.00 51 73 1 40 2.44 41 74 1 40 2.44 41 75 1 33 2.94 34 76 0 47 0.00 47 77 0 44 0.00 44 78 0 50 0.00 50 79 0 40 0.00 40 80 0 40 0.00 40 81 0 40 0.00 40 82 0 32 0.00 32 83 1 37 2.63 38 84 0 30 0.00 30 85 0 37 0.00 37 86 1 41 2.38 42 87 1 34 2.86 35 88 0 34 0.00 34 89 0 33 0.00 33 90 0 35 0.00 35 91 0 32 0.00 32 92 0 34 0.00 34 93 1 41 2.38 42 94 0 38 0.00 38 95 0 28 0.00 28 96 0 35 0.00 35 97 0 34 0.00 34 98 0 25 0.00 25 99 0 23 0.00 23 100 0 23 0.00 23 101 1 35 2.78 36 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 18 21.74 23 2 5 25 16.67 30 3 1 24 4.00 25 4 6 20 23.08 26 5 0 46 0.00 46 6 0 19 0.00 19 7 0 11 0.00 11 8 0 9 0.00 9 9 0 20 0.00 20 10 0 17 0.00 17 11 0 20 0.00 20 12 0 11 0.00 11 13 0 29 0.00 29 14 0 13 0.00 13 15 0 19 0.00 19 16 0 17 0.00 17 17 0 18 0.00 18 18 0 14 0.00 14 19 0 16 0.00 16 20 0 16 0.00 16 21 0 24 0.00 24 22 0 12 0.00 12 23 0 19 0.00 19 24 0 15 0.00 15 25 0 21 0.00 21 26 0 9 0.00 9 27 0 17 0.00 17 28 0 18 0.00 18 29 0 19 0.00 19 30 0 21 0.00 21 31 0 16 0.00 16 32 0 18 0.00 18 33 0 14 0.00 14 34 0 8 0.00 8 35 0 14 0.00 14 36 0 19 0.00 19 37 0 14 0.00 14 38 0 11 0.00 11 39 0 7 0.00 7 40 0 7 0.00 7 41 0 8 0.00 8 42 0 11 0.00 11 43 0 14 0.00 14 44 0 13 0.00 13 45 0 7 0.00 7 46 0 12 0.00 12 47 0 8 0.00 8 48 0 20 0.00 20 49 1 5 16.67 6 50 0 7 0.00 7 51 0 7 0.00 7 52 0 16 0.00 16 53 0 3 0.00 3 54 1 10 9.09 11 55 0 8 0.00 8 56 0 7 0.00 7 57 0 9 0.00 9 58 0 8 0.00 8 59 0 5 0.00 5 60 0 7 0.00 7 61 0 4 0.00 4 62 0 6 0.00 6 63 0 12 0.00 12 64 0 7 0.00 7 65 0 6 0.00 6 66 0 12 0.00 12 67 0 5 0.00 5 68 0 5 0.00 5 69 0 5 0.00 5 70 0 3 0.00 3 71 0 6 0.00 6 72 0 5 0.00 5 73 0 4 0.00 4 74 0 5 0.00 5 75 0 2 0.00 2 76 0 7 0.00 7 77 0 7 0.00 7 78 0 6 0.00 6 79 0 7 0.00 7 80 0 6 0.00 6 81 0 5 0.00 5 82 0 2 0.00 2 83 0 12 0.00 12 84 0 7 0.00 7 85 0 6 0.00 6 86 0 6 0.00 6 87 0 8 0.00 8 88 0 4 0.00 4 89 0 3 0.00 3 90 1 4 20.00 5 91 0 5 0.00 5 92 0 3 0.00 3 93 0 7 0.00 7 94 0 5 0.00 5 95 0 5 0.00 5 96 0 2 0.00 2 97 0 4 0.00 4 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 3 0.00 3 2 3 20 13.04 23 3 7 11 38.89 18 4 7 15 31.82 22 5 0 26 0.00 26 6 0 28 0.00 28 7 0 12 0.00 12 8 0 24 0.00 24 9 0 23 0.00 23 10 0 21 0.00 21 11 0 16 0.00 16 12 1 11 8.33 12 13 0 16 0.00 16 14 0 21 0.00 21 15 0 11 0.00 11 16 0 14 0.00 14 17 1 17 5.56 18 18 0 16 0.00 16 19 0 14 0.00 14 20 0 12 0.00 12 21 0 7 0.00 7 22 1 18 5.26 19 23 0 14 0.00 14 24 0 16 0.00 16 25 0 8 0.00 8 26 0 17 0.00 17 27 0 13 0.00 13 28 0 15 0.00 15 29 1 19 5.00 20 30 0 20 0.00 20 31 0 15 0.00 15 32 1 13 7.14 14 33 1 12 7.69 13 34 0 21 0.00 21 35 0 10 0.00 10 36 0 17 0.00 17 37 0 9 0.00 9 38 0 15 0.00 15 39 0 13 0.00 13 40 0 8 0.00 8 41 0 12 0.00 12 42 1 9 10.00 10 43 0 7 0.00 7 44 1 13 7.14 14 45 0 13 0.00 13 46 0 20 0.00 20 47 0 15 0.00 15 48 0 11 0.00 11 49 0 13 0.00 13 50 0 13 0.00 13 51 0 9 0.00 9 52 0 11 0.00 11 53 0 8 0.00 8 54 0 6 0.00 6 55 0 8 0.00 8 56 0 9 0.00 9 57 0 8 0.00 8 58 0 3 0.00 3 59 0 3 0.00 3 60 1 11 8.33 12 61 0 8 0.00 8 62 0 5 0.00 5 63 0 7 0.00 7 64 0 9 0.00 9 65 0 12 0.00 12 66 0 8 0.00 8 67 0 5 0.00 5 68 1 6 14.29 7 69 0 3 0.00 3 70 0 12 0.00 12 71 0 6 0.00 6 72 1 10 9.09 11 73 0 9 0.00 9 74 0 6 0.00 6 75 1 6 14.29 7 76 0 4 0.00 4 77 0 3 0.00 3 78 0 3 0.00 3 79 0 7 0.00 7 80 0 8 0.00 8 81 0 6 0.00 6 82 0 7 0.00 7 83 0 6 0.00 6 84 0 3 0.00 3 85 0 3 0.00 3 86 0 6 0.00 6 87 0 6 0.00 6 88 0 3 0.00 3 89 0 6 0.00 6 90 0 3 0.00 3 91 0 7 0.00 7 92 0 11 0.00 11 93 0 3 0.00 3 94 0 5 0.00 5 95 0 8 0.00 8 96 0 6 0.00 6 97 0 4 0.00 4 98 0 5 0.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 19 9.52 21 2 2 7 22.22 9 3 2 4 33.33 6 4 2 9 18.18 11 5 0 18 0.00 18 6 0 20 0.00 20 7 0 33 0.00 33 8 0 44 0.00 44 9 0 33 0.00 33 10 0 27 0.00 27 11 0 32 0.00 32 12 0 31 0.00 31 13 0 34 0.00 34 14 0 33 0.00 33 15 1 38 2.56 39 16 0 34 0.00 34 17 1 28 3.45 29 18 0 32 0.00 32 19 0 18 0.00 18 20 0 18 0.00 18 21 0 20 0.00 20 22 0 26 0.00 26 23 0 18 0.00 18 24 1 26 3.70 27 25 0 20 0.00 20 26 0 18 0.00 18 27 0 28 0.00 28 28 0 24 0.00 24 29 0 29 0.00 29 30 0 19 0.00 19 31 0 22 0.00 22 32 0 21 0.00 21 33 0 23 0.00 23 34 0 19 0.00 19 35 0 26 0.00 26 36 0 21 0.00 21 37 0 13 0.00 13 38 1 30 3.23 31 39 1 28 3.45 29 40 0 20 0.00 20 41 0 14 0.00 14 42 0 21 0.00 21 43 0 22 0.00 22 44 0 19 0.00 19 45 0 21 0.00 21 46 0 18 0.00 18 47 0 17 0.00 17 48 0 22 0.00 22 49 0 18 0.00 18 50 0 19 0.00 19 51 0 16 0.00 16 52 0 8 0.00 8 53 0 13 0.00 13 54 0 16 0.00 16 55 0 23 0.00 23 56 0 13 0.00 13 57 0 15 0.00 15 58 0 10 0.00 10 59 0 14 0.00 14 60 1 9 10.00 10 61 0 21 0.00 21 62 0 11 0.00 11 63 0 19 0.00 19 64 0 18 0.00 18 65 0 12 0.00 12 66 0 13 0.00 13 67 0 9 0.00 9 68 0 17 0.00 17 69 0 13 0.00 13 70 0 12 0.00 12 71 0 15 0.00 15 72 0 9 0.00 9 73 0 10 0.00 10 74 0 13 0.00 13 75 0 11 0.00 11 76 0 11 0.00 11 77 0 13 0.00 13 78 0 10 0.00 10 79 0 13 0.00 13 80 0 12 0.00 12 81 0 9 0.00 9 82 0 9 0.00 9 83 0 12 0.00 12 84 0 11 0.00 11 85 0 13 0.00 13 86 0 10 0.00 10 87 0 11 0.00 11 88 0 11 0.00 11 89 0 8 0.00 8 90 0 6 0.00 6 91 0 7 0.00 7 92 0 9 0.00 9 93 0 14 0.00 14 94 0 6 0.00 6 95 0 9 0.00 9 96 0 7 0.00 7 97 0 9 0.00 9 98 0 10 0.00 10