/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
512
Pairs without alignments under any condition
99488
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
21465
Methylated C's in CpG context
67
Methylated C's in CHG context
184
Methylated C's in CHH context
76
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
6109
Unmethylated C's in CHG context
5946
Unmethylated C's in CHH context
9083
Unmethylated C's in Unknown context
6
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
0.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
341
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
171
original bottom strand
Deduplication
Alignments analysed
512
Unique alignments
497
Duplicates removed
15
Duplicated alignments were found at 12 different positions
