/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
626
Pairs without alignments under any condition
99374
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
27210
Methylated C's in CpG context
69
Methylated C's in CHG context
210
Methylated C's in CHH context
82
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
7706
Unmethylated C's in CHG context
7606
Unmethylated C's in CHH context
11537
Unmethylated C's in Unknown context
6
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
0.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
402
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
224
original bottom strand
Deduplication
Alignments analysed
626
Unique alignments
611
Duplicates removed
15
Duplicated alignments were found at 11 different positions
