/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
464
Pairs without alignments under any condition
99536
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
16764
Methylated C's in CpG context
51
Methylated C's in CHG context
230
Methylated C's in CHH context
80
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
4862
Unmethylated C's in CHG context
4524
Unmethylated C's in CHH context
7017
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.0%
Percentage methylation (CHG context)
4.8%
Percentage methylation (CHH context)
1.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
313
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
151
original bottom strand
Deduplication
Alignments analysed
464
Unique alignments
446
Duplicates removed
18
Duplicated alignments were found at 15 different positions
