/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
579
Pairs without alignments under any condition
99421
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
23642
Methylated C's in CpG context
71
Methylated C's in CHG context
251
Methylated C's in CHH context
126
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
6804
Unmethylated C's in CHG context
6632
Unmethylated C's in CHH context
9758
Unmethylated C's in Unknown context
7
Percentage methylation (CpG context)
1.0%
Percentage methylation (CHG context)
3.6%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
397
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
182
original bottom strand
Deduplication
Alignments analysed
579
Unique alignments
545
Duplicates removed
34
Duplicated alignments were found at 27 different positions
