CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 60 4.76 63 2 1 82 1.20 83 3 1 73 1.35 74 4 0 49 0.00 49 5 1 48 2.04 49 6 0 22 0.00 22 7 0 28 0.00 28 8 0 34 0.00 34 9 0 35 0.00 35 10 0 43 0.00 43 11 0 37 0.00 37 12 0 39 0.00 39 13 0 28 0.00 28 14 0 39 0.00 39 15 0 25 0.00 25 16 1 42 2.33 43 17 0 37 0.00 37 18 0 37 0.00 37 19 0 30 0.00 30 20 0 41 0.00 41 21 0 38 0.00 38 22 0 41 0.00 41 23 0 36 0.00 36 24 1 34 2.86 35 25 1 40 2.44 41 26 0 29 0.00 29 27 0 41 0.00 41 28 0 41 0.00 41 29 0 27 0.00 27 30 0 32 0.00 32 31 1 43 2.27 44 32 0 37 0.00 37 33 2 25 7.41 27 34 1 35 2.78 36 35 0 47 0.00 47 36 0 26 0.00 26 37 1 30 3.23 31 38 1 38 2.56 39 39 0 39 0.00 39 40 1 40 2.44 41 41 0 30 0.00 30 42 0 38 0.00 38 43 0 34 0.00 34 44 2 36 5.26 38 45 0 31 0.00 31 46 0 27 0.00 27 47 0 35 0.00 35 48 0 23 0.00 23 49 0 36 0.00 36 50 0 32 0.00 32 51 2 35 5.41 37 52 1 34 2.86 35 53 0 34 0.00 34 54 0 24 0.00 24 55 0 35 0.00 35 56 0 36 0.00 36 57 0 28 0.00 28 58 0 51 0.00 51 59 1 51 1.92 52 60 0 31 0.00 31 61 0 29 0.00 29 62 0 28 0.00 28 63 0 23 0.00 23 64 1 20 4.76 21 65 0 19 0.00 19 66 0 28 0.00 28 67 1 26 3.70 27 68 0 20 0.00 20 69 1 24 4.00 25 70 1 26 3.70 27 71 1 23 4.17 24 72 0 23 0.00 23 73 0 22 0.00 22 74 0 32 0.00 32 75 1 24 4.00 25 76 0 21 0.00 21 77 0 25 0.00 25 78 2 19 9.52 21 79 1 17 5.56 18 80 0 22 0.00 22 81 0 27 0.00 27 82 1 30 3.23 31 83 1 31 3.12 32 84 0 22 0.00 22 85 0 14 0.00 14 86 0 19 0.00 19 87 0 21 0.00 21 88 0 27 0.00 27 89 0 18 0.00 18 90 0 10 0.00 10 91 0 18 0.00 18 92 1 18 5.26 19 93 0 16 0.00 16 94 1 14 6.67 15 95 0 12 0.00 12 96 0 8 0.00 8 97 0 25 0.00 25 98 0 13 0.00 13 99 0 12 0.00 12 100 0 19 0.00 19 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 42 24 63.64 66 2 24 17 58.54 41 3 13 23 36.11 36 4 4 32 11.11 36 5 2 24 7.69 26 6 2 19 9.52 21 7 2 39 4.88 41 8 0 42 0.00 42 9 0 27 0.00 27 10 0 32 0.00 32 11 0 39 0.00 39 12 0 30 0.00 30 13 1 43 2.27 44 14 1 35 2.78 36 15 0 31 0.00 31 16 0 41 0.00 41 17 2 22 8.33 24 18 1 30 3.23 31 19 0 33 0.00 33 20 1 38 2.56 39 21 0 27 0.00 27 22 0 33 0.00 33 23 0 40 0.00 40 24 1 41 2.38 42 25 1 38 2.56 39 26 1 42 2.33 43 27 0 49 0.00 49 28 1 34 2.86 35 29 0 37 0.00 37 30 1 30 3.23 31 31 1 38 2.56 39 32 1 31 3.12 32 33 1 40 2.44 41 34 1 41 2.38 42 35 0 37 0.00 37 36 1 45 2.17 46 37 0 46 0.00 46 38 0 32 0.00 32 39 0 35 0.00 35 40 0 41 0.00 41 41 1 36 2.70 37 42 1 40 2.44 41 43 1 22 4.35 23 44 0 35 0.00 35 45 1 36 2.70 37 46 0 27 0.00 27 47 0 28 0.00 28 48 1 37 2.63 38 49 3 23 11.54 26 50 0 27 0.00 27 51 0 34 0.00 34 52 0 39 0.00 39 53 0 29 0.00 29 54 1 36 2.70 37 55 1 27 3.57 28 56 1 37 2.63 38 57 1 31 3.12 32 58 1 32 3.03 33 59 2 20 9.09 22 60 1 38 2.56 39 61 0 41 0.00 41 62 1 28 3.45 29 63 0 34 0.00 34 64 0 26 0.00 26 65 1 22 4.35 23 66 0 34 0.00 34 67 0 29 0.00 29 68 0 26 0.00 26 69 3 23 11.54 26 70 0 22 0.00 22 71 0 31 0.00 31 72 0 29 0.00 29 73 0 25 0.00 25 74 1 20 4.76 21 75 1 25 3.85 26 76 1 24 4.00 25 77 0 26 0.00 26 78 0 22 0.00 22 79 1 23 4.17 24 80 0 23 0.00 23 81 1 22 4.35 23 82 0 26 0.00 26 83 0 19 0.00 19 84 0 20 0.00 20 85 1 19 5.00 20 86 0 12 0.00 12 87 0 27 0.00 27 88 1 19 5.00 20 89 0 14 0.00 14 90 1 13 7.14 14 91 2 14 12.50 16 92 1 25 3.85 26 93 0 15 0.00 15 94 0 14 0.00 14 95 1 9 10.00 10 96 0 18 0.00 18 97 0 13 0.00 13 98 1 10 9.09 11 99 1 7 12.50 8 100 1 6 14.29 7 101 3 15 16.67 18 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10 9 52.63 19 2 3 14 17.65 17 3 1 35 2.78 36 4 2 28 6.67 30 5 4 39 9.30 43 6 2 48 4.00 50 7 1 53 1.85 54 8 1 48 2.04 49 9 2 47 4.08 49 10 0 45 0.00 45 11 0 40 0.00 40 12 1 40 2.44 41 13 0 53 0.00 53 14 1 57 1.72 58 15 1 52 1.89 53 16 0 69 0.00 69 17 0 62 0.00 62 18 1 56 1.75 57 19 1 64 1.54 65 20 1 54 1.82 55 21 0 48 0.00 48 22 0 67 0.00 67 23 0 61 0.00 61 24 0 59 0.00 59 25 2 70 2.78 72 26 0 68 0.00 68 27 0 50 0.00 50 28 1 66 1.49 67 29 0 61 0.00 61 30 0 79 0.00 79 31 0 55 0.00 55 32 1 72 1.37 73 33 1 54 1.82 55 34 0 50 0.00 50 35 1 46 2.13 47 36 0 42 0.00 42 37 1 48 2.04 49 38 0 61 0.00 61 39 0 63 0.00 63 40 0 45 0.00 45 41 1 48 2.04 49 42 0 46 0.00 46 43 1 57 1.72 58 44 1 63 1.56 64 45 0 49 0.00 49 46 1 62 1.59 63 47 1 51 1.92 52 48 0 55 0.00 55 49 1 48 2.04 49 50 0 56 0.00 56 51 0 56 0.00 56 52 0 44 0.00 44 53 2 60 3.23 62 54 1 56 1.75 57 55 2 51 3.77 53 56 0 52 0.00 52 57 0 52 0.00 52 58 0 35 0.00 35 59 0 52 0.00 52 60 2 46 4.17 48 61 1 37 2.63 38 62 0 45 0.00 45 63 0 46 0.00 46 64 0 58 0.00 58 65 2 60 3.23 62 66 0 37 0.00 37 67 0 32 0.00 32 68 0 54 0.00 54 69 1 42 2.33 43 70 0 45 0.00 45 71 0 32 0.00 32 72 0 34 0.00 34 73 1 26 3.70 27 74 0 33 0.00 33 75 0 41 0.00 41 76 1 36 2.70 37 77 0 50 0.00 50 78 0 45 0.00 45 79 1 36 2.70 37 80 1 32 3.03 33 81 0 33 0.00 33 82 0 25 0.00 25 83 0 24 0.00 24 84 1 31 3.12 32 85 0 31 0.00 31 86 0 24 0.00 24 87 0 21 0.00 21 88 0 24 0.00 24 89 1 23 4.17 24 90 0 25 0.00 25 91 1 26 3.70 27 92 0 27 0.00 27 93 0 32 0.00 32 94 0 26 0.00 26 95 0 30 0.00 30 96 0 23 0.00 23 97 0 24 0.00 24 98 0 27 0.00 27 99 0 17 0.00 17 100 0 20 0.00 20 101 1 28 3.45 29 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 14 12.50 16 2 1 12 7.69 13 3 3 27 10.00 30 4 2 17 10.53 19 5 0 21 0.00 21 6 0 13 0.00 13 7 0 12 0.00 12 8 0 12 0.00 12 9 0 13 0.00 13 10 0 19 0.00 19 11 0 12 0.00 12 12 0 11 0.00 11 13 0 13 0.00 13 14 0 11 0.00 11 15 0 13 0.00 13 16 1 10 9.09 11 17 0 9 0.00 9 18 0 11 0.00 11 19 0 17 0.00 17 20 0 10 0.00 10 21 0 16 0.00 16 22 0 6 0.00 6 23 0 14 0.00 14 24 0 11 0.00 11 25 0 9 0.00 9 26 0 13 0.00 13 27 0 9 0.00 9 28 0 10 0.00 10 29 0 12 0.00 12 30 0 10 0.00 10 31 0 10 0.00 10 32 0 9 0.00 9 33 0 16 0.00 16 34 0 16 0.00 16 35 0 11 0.00 11 36 0 14 0.00 14 37 0 11 0.00 11 38 0 6 0.00 6 39 0 7 0.00 7 40 1 4 20.00 5 41 0 4 0.00 4 42 0 8 0.00 8 43 0 8 0.00 8 44 0 9 0.00 9 45 0 4 0.00 4 46 0 6 0.00 6 47 0 6 0.00 6 48 0 8 0.00 8 49 0 6 0.00 6 50 0 11 0.00 11 51 0 7 0.00 7 52 0 12 0.00 12 53 0 7 0.00 7 54 0 6 0.00 6 55 0 7 0.00 7 56 0 5 0.00 5 57 0 2 0.00 2 58 0 7 0.00 7 59 0 7 0.00 7 60 0 3 0.00 3 61 0 3 0.00 3 62 0 5 0.00 5 63 0 4 0.00 4 64 0 9 0.00 9 65 0 6 0.00 6 66 0 5 0.00 5 67 0 5 0.00 5 68 0 2 0.00 2 69 0 9 0.00 9 70 0 3 0.00 3 71 0 4 0.00 4 72 0 5 0.00 5 73 1 4 20.00 5 74 0 7 0.00 7 75 0 10 0.00 10 76 0 4 0.00 4 77 0 0 0 78 0 2 0.00 2 79 0 7 0.00 7 80 0 7 0.00 7 81 0 5 0.00 5 82 0 0 0 83 0 7 0.00 7 84 0 3 0.00 3 85 0 3 0.00 3 86 0 4 0.00 4 87 0 2 0.00 2 88 0 2 0.00 2 89 0 1 0.00 1 90 0 4 0.00 4 91 0 4 0.00 4 92 0 3 0.00 3 93 0 5 0.00 5 94 0 0 0 95 0 2 0.00 2 96 0 1 0.00 1 97 0 6 0.00 6 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 7 22.22 9 2 0 7 0.00 7 3 6 8 42.86 14 4 1 10 9.09 11 5 0 19 0.00 19 6 0 17 0.00 17 7 0 11 0.00 11 8 0 14 0.00 14 9 1 13 7.14 14 10 1 9 10.00 10 11 0 13 0.00 13 12 0 12 0.00 12 13 0 14 0.00 14 14 0 15 0.00 15 15 0 18 0.00 18 16 0 14 0.00 14 17 2 15 11.76 17 18 0 10 0.00 10 19 0 16 0.00 16 20 0 10 0.00 10 21 0 5 0.00 5 22 0 14 0.00 14 23 0 13 0.00 13 24 0 14 0.00 14 25 0 7 0.00 7 26 0 11 0.00 11 27 0 10 0.00 10 28 0 13 0.00 13 29 1 16 5.88 17 30 0 5 0.00 5 31 0 11 0.00 11 32 0 11 0.00 11 33 0 13 0.00 13 34 0 9 0.00 9 35 0 11 0.00 11 36 0 10 0.00 10 37 0 9 0.00 9 38 0 15 0.00 15 39 0 11 0.00 11 40 0 12 0.00 12 41 0 10 0.00 10 42 0 7 0.00 7 43 0 6 0.00 6 44 0 14 0.00 14 45 0 10 0.00 10 46 0 3 0.00 3 47 0 8 0.00 8 48 0 8 0.00 8 49 0 5 0.00 5 50 1 8 11.11 9 51 0 11 0.00 11 52 0 2 0.00 2 53 0 10 0.00 10 54 0 6 0.00 6 55 0 11 0.00 11 56 0 6 0.00 6 57 0 4 0.00 4 58 0 5 0.00 5 59 0 10 0.00 10 60 2 2 50.00 4 61 0 5 0.00 5 62 0 5 0.00 5 63 1 5 16.67 6 64 0 3 0.00 3 65 0 4 0.00 4 66 0 4 0.00 4 67 0 3 0.00 3 68 1 6 14.29 7 69 0 3 0.00 3 70 0 10 0.00 10 71 0 3 0.00 3 72 0 6 0.00 6 73 0 4 0.00 4 74 0 7 0.00 7 75 0 5 0.00 5 76 0 3 0.00 3 77 0 1 0.00 1 78 0 7 0.00 7 79 0 3 0.00 3 80 0 7 0.00 7 81 0 7 0.00 7 82 0 3 0.00 3 83 0 1 0.00 1 84 0 7 0.00 7 85 0 8 0.00 8 86 0 3 0.00 3 87 0 5 0.00 5 88 0 3 0.00 3 89 0 4 0.00 4 90 0 2 0.00 2 91 0 3 0.00 3 92 0 1 0.00 1 93 0 4 0.00 4 94 0 2 0.00 2 95 0 4 0.00 4 96 0 3 0.00 3 97 0 0 0 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 10 16.67 12 2 1 8 11.11 9 3 2 4 33.33 6 4 2 5 28.57 7 5 0 16 0.00 16 6 0 19 0.00 19 7 0 16 0.00 16 8 0 35 0.00 35 9 1 25 3.85 26 10 0 33 0.00 33 11 0 22 0.00 22 12 0 24 0.00 24 13 0 28 0.00 28 14 0 28 0.00 28 15 0 21 0.00 21 16 0 27 0.00 27 17 0 23 0.00 23 18 0 24 0.00 24 19 0 28 0.00 28 20 0 9 0.00 9 21 0 16 0.00 16 22 0 19 0.00 19 23 0 22 0.00 22 24 0 16 0.00 16 25 0 17 0.00 17 26 0 20 0.00 20 27 0 14 0.00 14 28 1 14 6.67 15 29 0 15 0.00 15 30 0 18 0.00 18 31 0 17 0.00 17 32 0 12 0.00 12 33 0 29 0.00 29 34 1 22 4.35 23 35 0 9 0.00 9 36 0 22 0.00 22 37 0 18 0.00 18 38 0 22 0.00 22 39 0 26 0.00 26 40 0 18 0.00 18 41 0 13 0.00 13 42 0 10 0.00 10 43 0 19 0.00 19 44 0 16 0.00 16 45 0 20 0.00 20 46 0 14 0.00 14 47 1 8 11.11 9 48 0 13 0.00 13 49 0 13 0.00 13 50 0 14 0.00 14 51 0 13 0.00 13 52 0 14 0.00 14 53 0 14 0.00 14 54 0 14 0.00 14 55 0 13 0.00 13 56 0 20 0.00 20 57 0 10 0.00 10 58 0 8 0.00 8 59 0 13 0.00 13 60 0 15 0.00 15 61 0 11 0.00 11 62 0 5 0.00 5 63 0 8 0.00 8 64 0 13 0.00 13 65 0 6 0.00 6 66 0 11 0.00 11 67 0 11 0.00 11 68 0 5 0.00 5 69 0 11 0.00 11 70 0 6 0.00 6 71 0 10 0.00 10 72 1 6 14.29 7 73 0 9 0.00 9 74 0 4 0.00 4 75 0 5 0.00 5 76 0 8 0.00 8 77 0 7 0.00 7 78 0 9 0.00 9 79 0 11 0.00 11 80 0 4 0.00 4 81 0 7 0.00 7 82 0 7 0.00 7 83 0 3 0.00 3 84 0 6 0.00 6 85 1 4 20.00 5 86 0 9 0.00 9 87 0 4 0.00 4 88 0 8 0.00 8 89 0 4 0.00 4 90 0 5 0.00 5 91 0 8 0.00 8 92 0 7 0.00 7 93 0 7 0.00 7 94 0 8 0.00 8 95 0 4 0.00 4 96 0 7 0.00 7 97 0 2 0.00 2 98 0 5 0.00 5