/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
615
Pairs without alignments under any condition
99385
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
22576
Methylated C's in CpG context
83
Methylated C's in CHG context
302
Methylated C's in CHH context
127
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
6495
Unmethylated C's in CHG context
6133
Unmethylated C's in CHH context
9436
Unmethylated C's in Unknown context
6
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
4.7%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
419
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
196
original bottom strand
Deduplication
Alignments analysed
615
Unique alignments
577
Duplicates removed
38
Duplicated alignments were found at 31 different positions
