CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 82 3.53 85 2 1 99 1.00 100 3 1 98 1.01 99 4 0 58 0.00 58 5 0 43 0.00 43 6 0 36 0.00 36 7 1 39 2.50 40 8 0 52 0.00 52 9 0 43 0.00 43 10 0 41 0.00 41 11 1 45 2.17 46 12 0 38 0.00 38 13 1 32 3.03 33 14 0 49 0.00 49 15 1 43 2.27 44 16 0 49 0.00 49 17 1 54 1.82 55 18 0 45 0.00 45 19 0 58 0.00 58 20 1 53 1.85 54 21 1 50 1.96 51 22 0 61 0.00 61 23 1 52 1.89 53 24 0 43 0.00 43 25 0 48 0.00 48 26 0 54 0.00 54 27 0 48 0.00 48 28 1 53 1.85 54 29 0 41 0.00 41 30 0 55 0.00 55 31 0 48 0.00 48 32 0 48 0.00 48 33 0 53 0.00 53 34 2 44 4.35 46 35 1 57 1.72 58 36 1 43 2.27 44 37 0 38 0.00 38 38 1 61 1.61 62 39 1 49 2.00 50 40 1 48 2.04 49 41 0 48 0.00 48 42 0 44 0.00 44 43 0 38 0.00 38 44 0 43 0.00 43 45 0 32 0.00 32 46 0 42 0.00 42 47 1 43 2.27 44 48 0 53 0.00 53 49 0 50 0.00 50 50 0 44 0.00 44 51 1 59 1.67 60 52 0 43 0.00 43 53 0 45 0.00 45 54 1 45 2.17 46 55 0 38 0.00 38 56 1 50 1.96 51 57 0 49 0.00 49 58 1 51 1.92 52 59 3 63 4.55 66 60 2 45 4.26 47 61 1 52 1.89 53 62 1 31 3.12 32 63 1 43 2.27 44 64 1 45 2.17 46 65 0 34 0.00 34 66 0 39 0.00 39 67 0 45 0.00 45 68 0 35 0.00 35 69 0 33 0.00 33 70 0 32 0.00 32 71 1 37 2.63 38 72 0 30 0.00 30 73 0 38 0.00 38 74 0 39 0.00 39 75 0 35 0.00 35 76 0 30 0.00 30 77 0 29 0.00 29 78 0 36 0.00 36 79 0 25 0.00 25 80 1 45 2.17 46 81 1 47 2.08 48 82 0 39 0.00 39 83 0 29 0.00 29 84 1 31 3.12 32 85 0 32 0.00 32 86 0 29 0.00 29 87 0 34 0.00 34 88 0 28 0.00 28 89 0 23 0.00 23 90 0 32 0.00 32 91 0 32 0.00 32 92 0 30 0.00 30 93 0 27 0.00 27 94 0 24 0.00 24 95 1 29 3.33 30 96 1 25 3.85 26 97 0 25 0.00 25 98 0 20 0.00 20 99 0 33 0.00 33 100 1 28 3.45 29 101 0 17 0.00 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 37 53.75 80 2 31 23 57.41 54 3 13 31 29.55 44 4 5 51 8.93 56 5 7 35 16.67 42 6 4 38 9.52 42 7 3 48 5.88 51 8 0 40 0.00 40 9 0 41 0.00 41 10 1 45 2.17 46 11 1 51 1.92 52 12 0 40 0.00 40 13 1 45 2.17 46 14 0 49 0.00 49 15 0 40 0.00 40 16 1 44 2.22 45 17 1 50 1.96 51 18 1 37 2.63 38 19 2 48 4.00 50 20 1 42 2.33 43 21 0 39 0.00 39 22 0 36 0.00 36 23 1 50 1.96 51 24 0 42 0.00 42 25 0 58 0.00 58 26 1 52 1.89 53 27 1 53 1.85 54 28 2 55 3.51 57 29 1 60 1.64 61 30 0 46 0.00 46 31 0 48 0.00 48 32 1 44 2.22 45 33 0 48 0.00 48 34 2 54 3.57 56 35 0 50 0.00 50 36 3 70 4.11 73 37 1 52 1.89 53 38 0 46 0.00 46 39 1 53 1.85 54 40 1 52 1.89 53 41 1 53 1.85 54 42 0 48 0.00 48 43 0 50 0.00 50 44 1 58 1.69 59 45 0 51 0.00 51 46 1 38 2.56 39 47 1 51 1.92 52 48 1 51 1.92 52 49 0 32 0.00 32 50 2 39 4.88 41 51 0 31 0.00 31 52 0 45 0.00 45 53 1 51 1.92 52 54 1 49 2.00 50 55 1 40 2.44 41 56 1 51 1.92 52 57 0 48 0.00 48 58 0 40 0.00 40 59 0 39 0.00 39 60 1 50 1.96 51 61 1 48 2.04 49 62 1 36 2.70 37 63 0 52 0.00 52 64 2 39 4.88 41 65 2 39 4.88 41 66 0 43 0.00 43 67 0 50 0.00 50 68 1 42 2.33 43 69 3 38 7.32 41 70 1 50 1.96 51 71 0 28 0.00 28 72 1 40 2.44 41 73 1 34 2.86 35 74 0 36 0.00 36 75 2 36 5.26 38 76 1 35 2.78 36 77 1 40 2.44 41 78 0 33 0.00 33 79 0 43 0.00 43 80 0 28 0.00 28 81 2 29 6.45 31 82 0 30 0.00 30 83 2 28 6.67 30 84 1 37 2.63 38 85 0 25 0.00 25 86 1 32 3.03 33 87 0 35 0.00 35 88 1 28 3.45 29 89 1 30 3.23 31 90 0 30 0.00 30 91 2 27 6.90 29 92 1 27 3.57 28 93 1 27 3.57 28 94 1 28 3.45 29 95 0 37 0.00 37 96 0 27 0.00 27 97 0 24 0.00 24 98 1 19 5.00 20 99 0 20 0.00 20 100 2 16 11.11 18 101 2 18 10.00 20 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12 15 44.44 27 2 4 22 15.38 26 3 3 45 6.25 48 4 2 46 4.17 48 5 5 52 8.77 57 6 3 55 5.17 58 7 0 64 0.00 64 8 3 59 4.84 62 9 0 60 0.00 60 10 0 63 0.00 63 11 1 59 1.67 60 12 0 73 0.00 73 13 0 83 0.00 83 14 1 62 1.59 63 15 1 60 1.64 61 16 0 59 0.00 59 17 0 51 0.00 51 18 0 70 0.00 70 19 0 68 0.00 68 20 1 65 1.52 66 21 0 69 0.00 69 22 1 81 1.22 82 23 0 81 0.00 81 24 1 59 1.67 60 25 0 85 0.00 85 26 1 91 1.09 92 27 1 81 1.22 82 28 0 89 0.00 89 29 0 81 0.00 81 30 0 85 0.00 85 31 1 74 1.33 75 32 1 88 1.12 89 33 1 75 1.32 76 34 0 54 0.00 54 35 1 77 1.28 78 36 1 66 1.49 67 37 0 77 0.00 77 38 0 69 0.00 69 39 0 65 0.00 65 40 0 59 0.00 59 41 0 75 0.00 75 42 0 65 0.00 65 43 0 74 0.00 74 44 0 86 0.00 86 45 0 87 0.00 87 46 2 91 2.15 93 47 1 80 1.23 81 48 1 76 1.30 77 49 0 68 0.00 68 50 1 73 1.35 74 51 0 87 0.00 87 52 1 76 1.30 77 53 1 92 1.08 93 54 0 81 0.00 81 55 0 82 0.00 82 56 1 71 1.39 72 57 1 74 1.33 75 58 1 60 1.64 61 59 0 57 0.00 57 60 0 62 0.00 62 61 0 58 0.00 58 62 1 68 1.45 69 63 1 76 1.30 77 64 0 69 0.00 69 65 0 58 0.00 58 66 0 60 0.00 60 67 0 59 0.00 59 68 0 47 0.00 47 69 1 51 1.92 52 70 0 42 0.00 42 71 0 51 0.00 51 72 0 64 0.00 64 73 0 52 0.00 52 74 0 74 0.00 74 75 0 63 0.00 63 76 1 64 1.54 65 77 0 56 0.00 56 78 0 62 0.00 62 79 0 55 0.00 55 80 0 56 0.00 56 81 1 52 1.89 53 82 0 53 0.00 53 83 2 48 4.00 50 84 2 46 4.17 48 85 0 53 0.00 53 86 1 34 2.86 35 87 2 40 4.76 42 88 0 44 0.00 44 89 0 40 0.00 40 90 0 46 0.00 46 91 1 38 2.56 39 92 0 50 0.00 50 93 0 55 0.00 55 94 1 41 2.38 42 95 0 40 0.00 40 96 1 39 2.50 40 97 0 40 0.00 40 98 0 39 0.00 39 99 0 27 0.00 27 100 0 29 0.00 29 101 1 34 2.86 35 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 20 28.57 28 2 7 24 22.58 31 3 3 40 6.98 43 4 3 32 8.57 35 5 0 46 0.00 46 6 0 15 0.00 15 7 0 30 0.00 30 8 0 23 0.00 23 9 0 26 0.00 26 10 0 31 0.00 31 11 1 19 5.00 20 12 0 29 0.00 29 13 0 18 0.00 18 14 0 14 0.00 14 15 0 29 0.00 29 16 0 17 0.00 17 17 0 30 0.00 30 18 0 33 0.00 33 19 0 17 0.00 17 20 1 39 2.50 40 21 0 27 0.00 27 22 0 15 0.00 15 23 0 32 0.00 32 24 0 18 0.00 18 25 0 18 0.00 18 26 0 18 0.00 18 27 0 18 0.00 18 28 0 24 0.00 24 29 0 23 0.00 23 30 0 16 0.00 16 31 0 17 0.00 17 32 0 17 0.00 17 33 0 14 0.00 14 34 1 17 5.56 18 35 0 11 0.00 11 36 0 16 0.00 16 37 0 15 0.00 15 38 0 19 0.00 19 39 0 18 0.00 18 40 0 11 0.00 11 41 0 8 0.00 8 42 0 13 0.00 13 43 0 11 0.00 11 44 1 19 5.00 20 45 0 8 0.00 8 46 0 13 0.00 13 47 0 8 0.00 8 48 1 11 8.33 12 49 1 7 12.50 8 50 0 11 0.00 11 51 0 5 0.00 5 52 0 19 0.00 19 53 0 9 0.00 9 54 0 8 0.00 8 55 0 11 0.00 11 56 0 5 0.00 5 57 0 9 0.00 9 58 0 11 0.00 11 59 0 17 0.00 17 60 0 12 0.00 12 61 0 4 0.00 4 62 1 12 7.69 13 63 0 18 0.00 18 64 0 7 0.00 7 65 0 9 0.00 9 66 0 8 0.00 8 67 0 5 0.00 5 68 0 10 0.00 10 69 0 10 0.00 10 70 0 5 0.00 5 71 0 13 0.00 13 72 0 5 0.00 5 73 0 5 0.00 5 74 0 4 0.00 4 75 0 11 0.00 11 76 0 9 0.00 9 77 0 8 0.00 8 78 0 2 0.00 2 79 1 5 16.67 6 80 0 10 0.00 10 81 0 7 0.00 7 82 0 6 0.00 6 83 0 6 0.00 6 84 0 3 0.00 3 85 0 5 0.00 5 86 0 12 0.00 12 87 0 7 0.00 7 88 0 7 0.00 7 89 0 5 0.00 5 90 1 7 12.50 8 91 0 4 0.00 4 92 0 3 0.00 3 93 0 12 0.00 12 94 0 3 0.00 3 95 0 8 0.00 8 96 0 8 0.00 8 97 0 4 0.00 4 98 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 11 26.67 15 2 8 24 25.00 32 3 6 21 22.22 27 4 8 14 36.36 22 5 0 39 0.00 39 6 0 35 0.00 35 7 0 16 0.00 16 8 0 32 0.00 32 9 0 25 0.00 25 10 0 19 0.00 19 11 1 17 5.56 18 12 0 25 0.00 25 13 0 24 0.00 24 14 0 21 0.00 21 15 2 25 7.41 27 16 0 18 0.00 18 17 0 27 0.00 27 18 0 18 0.00 18 19 1 19 5.00 20 20 0 26 0.00 26 21 0 19 0.00 19 22 0 21 0.00 21 23 1 21 4.55 22 24 0 18 0.00 18 25 0 12 0.00 12 26 0 17 0.00 17 27 2 18 10.00 20 28 0 16 0.00 16 29 0 20 0.00 20 30 0 17 0.00 17 31 0 17 0.00 17 32 0 9 0.00 9 33 0 24 0.00 24 34 0 18 0.00 18 35 0 11 0.00 11 36 0 19 0.00 19 37 0 17 0.00 17 38 0 12 0.00 12 39 0 9 0.00 9 40 0 14 0.00 14 41 0 18 0.00 18 42 0 13 0.00 13 43 0 15 0.00 15 44 0 14 0.00 14 45 0 9 0.00 9 46 0 12 0.00 12 47 0 16 0.00 16 48 0 17 0.00 17 49 0 13 0.00 13 50 0 15 0.00 15 51 0 17 0.00 17 52 1 9 10.00 10 53 0 12 0.00 12 54 0 7 0.00 7 55 0 11 0.00 11 56 0 14 0.00 14 57 1 4 20.00 5 58 1 10 9.09 11 59 0 14 0.00 14 60 1 18 5.26 19 61 0 10 0.00 10 62 0 9 0.00 9 63 1 9 10.00 10 64 0 15 0.00 15 65 0 8 0.00 8 66 0 12 0.00 12 67 0 3 0.00 3 68 4 13 23.53 17 69 0 12 0.00 12 70 1 10 9.09 11 71 0 16 0.00 16 72 0 12 0.00 12 73 0 6 0.00 6 74 0 5 0.00 5 75 0 10 0.00 10 76 0 9 0.00 9 77 0 3 0.00 3 78 1 9 10.00 10 79 0 2 0.00 2 80 0 9 0.00 9 81 0 6 0.00 6 82 0 9 0.00 9 83 0 9 0.00 9 84 1 7 12.50 8 85 0 9 0.00 9 86 0 9 0.00 9 87 0 9 0.00 9 88 0 3 0.00 3 89 0 9 0.00 9 90 0 6 0.00 6 91 0 3 0.00 3 92 0 4 0.00 4 93 0 3 0.00 3 94 0 6 0.00 6 95 0 3 0.00 3 96 0 6 0.00 6 97 0 7 0.00 7 98 0 7 0.00 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 12 0.00 12 2 3 8 27.27 11 3 2 17 10.53 19 4 1 8 11.11 9 5 0 24 0.00 24 6 0 22 0.00 22 7 1 32 3.03 33 8 0 39 0.00 39 9 1 36 2.70 37 10 0 53 0.00 53 11 1 51 1.92 52 12 2 36 5.26 38 13 0 48 0.00 48 14 0 43 0.00 43 15 0 43 0.00 43 16 0 36 0.00 36 17 0 32 0.00 32 18 0 50 0.00 50 19 0 29 0.00 29 20 0 22 0.00 22 21 0 32 0.00 32 22 0 39 0.00 39 23 1 26 3.70 27 24 0 29 0.00 29 25 0 22 0.00 22 26 0 30 0.00 30 27 0 22 0.00 22 28 0 38 0.00 38 29 0 42 0.00 42 30 0 23 0.00 23 31 0 37 0.00 37 32 0 25 0.00 25 33 0 34 0.00 34 34 0 31 0.00 31 35 0 18 0.00 18 36 0 28 0.00 28 37 2 23 8.00 25 38 0 29 0.00 29 39 1 36 2.70 37 40 0 26 0.00 26 41 0 17 0.00 17 42 0 24 0.00 24 43 0 32 0.00 32 44 0 18 0.00 18 45 0 20 0.00 20 46 0 26 0.00 26 47 0 18 0.00 18 48 1 14 6.67 15 49 0 32 0.00 32 50 0 25 0.00 25 51 0 25 0.00 25 52 1 19 5.00 20 53 0 22 0.00 22 54 0 27 0.00 27 55 0 25 0.00 25 56 0 20 0.00 20 57 0 26 0.00 26 58 0 15 0.00 15 59 0 14 0.00 14 60 0 22 0.00 22 61 0 23 0.00 23 62 0 16 0.00 16 63 0 15 0.00 15 64 0 15 0.00 15 65 0 12 0.00 12 66 1 23 4.17 24 67 0 17 0.00 17 68 0 16 0.00 16 69 0 20 0.00 20 70 1 18 5.26 19 71 0 15 0.00 15 72 0 11 0.00 11 73 0 12 0.00 12 74 0 16 0.00 16 75 0 10 0.00 10 76 0 12 0.00 12 77 0 18 0.00 18 78 0 15 0.00 15 79 0 20 0.00 20 80 0 14 0.00 14 81 0 8 0.00 8 82 0 15 0.00 15 83 0 12 0.00 12 84 0 12 0.00 12 85 0 13 0.00 13 86 0 12 0.00 12 87 0 11 0.00 11 88 0 8 0.00 8 89 0 3 0.00 3 90 1 14 6.67 15 91 0 11 0.00 11 92 0 11 0.00 11 93 0 14 0.00 14 94 0 8 0.00 8 95 0 7 0.00 7 96 0 14 0.00 14 97 0 11 0.00 11 98 0 17 0.00 17