/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
829
Pairs without alignments under any condition
99171
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
33555
Methylated C's in CpG context
112
Methylated C's in CHG context
380
Methylated C's in CHH context
145
Methylated C's in Unknown context
5
Unmethylated C's in CpG context
9663
Unmethylated C's in CHG context
9316
Unmethylated C's in CHH context
13939
Unmethylated C's in Unknown context
15
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
565
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
264
original bottom strand
Deduplication
Alignments analysed
829
Unique alignments
734
Duplicates removed
95
Duplicated alignments were found at 55 different positions
