EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 609 lines in total Total number of methylation call strings processed: 1218 Final Cytosine Methylation Report ================================= Total number of C's analysed: 16860 Total methylated C's in CpG context: 63 Total methylated C's in CHG context: 182 Total methylated C's in CHH context: 108 Total C to T conversions in CpG context: 4751 Total C to T conversions in CHG context: 4561 Total C to T conversions in CHH context: 7195 C methylated in CpG context: 1.3% C methylated in CHG context: 3.8% C methylated in CHH context: 1.5%