/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
637
Pairs without alignments under any condition
99363
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
26175
Methylated C's in CpG context
100
Methylated C's in CHG context
289
Methylated C's in CHH context
159
Methylated C's in Unknown context
12
Unmethylated C's in CpG context
7435
Unmethylated C's in CHG context
7145
Unmethylated C's in CHH context
11047
Unmethylated C's in Unknown context
5
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
1.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
432
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
205
original bottom strand
Deduplication
Alignments analysed
637
Unique alignments
609
Duplicates removed
28
Duplicated alignments were found at 21 different positions