EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 429 lines in total Total number of methylation call strings processed: 858 Final Cytosine Methylation Report ================================= Total number of C's analysed: 11618 Total methylated C's in CpG context: 33 Total methylated C's in CHG context: 119 Total methylated C's in CHH context: 55 Total C to T conversions in CpG context: 3293 Total C to T conversions in CHG context: 3160 Total C to T conversions in CHH context: 4958 C methylated in CpG context: 1.0% C methylated in CHG context: 3.6% C methylated in CHH context: 1.1%