CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 59 1.67 60 2 0 72 0.00 72 3 0 42 0.00 42 4 1 34 2.86 35 5 0 34 0.00 34 6 1 17 5.56 18 7 0 27 0.00 27 8 0 18 0.00 18 9 0 28 0.00 28 10 0 25 0.00 25 11 0 26 0.00 26 12 0 34 0.00 34 13 0 22 0.00 22 14 0 36 0.00 36 15 0 20 0.00 20 16 0 32 0.00 32 17 0 32 0.00 32 18 0 25 0.00 25 19 0 28 0.00 28 20 0 30 0.00 30 21 0 39 0.00 39 22 0 29 0.00 29 23 0 32 0.00 32 24 0 28 0.00 28 25 1 14 6.67 15 26 0 21 0.00 21 27 0 32 0.00 32 28 0 24 0.00 24 29 0 25 0.00 25 30 0 23 0.00 23 31 0 29 0.00 29 32 0 22 0.00 22 33 0 25 0.00 25 34 1 28 3.45 29 35 0 26 0.00 26 36 0 25 0.00 25 37 1 23 4.17 24 38 0 22 0.00 22 39 0 29 0.00 29 40 1 32 3.03 33 41 0 32 0.00 32 42 0 25 0.00 25 43 0 19 0.00 19 44 0 26 0.00 26 45 1 17 5.56 18 46 0 21 0.00 21 47 0 20 0.00 20 48 0 24 0.00 24 49 0 36 0.00 36 50 0 25 0.00 25 51 0 41 0.00 41 52 0 30 0.00 30 53 0 25 0.00 25 54 0 28 0.00 28 55 1 28 3.45 29 56 0 24 0.00 24 57 0 22 0.00 22 58 0 31 0.00 31 59 0 47 0.00 47 60 0 24 0.00 24 61 0 26 0.00 26 62 0 24 0.00 24 63 0 26 0.00 26 64 2 23 8.00 25 65 0 27 0.00 27 66 0 12 0.00 12 67 0 21 0.00 21 68 0 16 0.00 16 69 0 18 0.00 18 70 1 21 4.55 22 71 0 26 0.00 26 72 0 16 0.00 16 73 0 21 0.00 21 74 0 33 0.00 33 75 0 20 0.00 20 76 0 25 0.00 25 77 0 19 0.00 19 78 1 21 4.55 22 79 0 26 0.00 26 80 1 18 5.26 19 81 0 29 0.00 29 82 0 28 0.00 28 83 0 22 0.00 22 84 0 15 0.00 15 85 1 27 3.57 28 86 1 30 3.23 31 87 0 26 0.00 26 88 0 10 0.00 10 89 0 17 0.00 17 90 0 13 0.00 13 91 0 25 0.00 25 92 0 14 0.00 14 93 1 16 5.88 17 94 0 15 0.00 15 95 0 12 0.00 12 96 0 14 0.00 14 97 0 16 0.00 16 98 0 12 0.00 12 99 1 14 6.67 15 100 0 15 0.00 15 101 1 16 5.88 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 37 18 67.27 55 2 11 12 47.83 23 3 9 16 36.00 25 4 2 31 6.06 33 5 1 26 3.70 27 6 1 8 11.11 9 7 0 34 0.00 34 8 1 30 3.23 31 9 0 20 0.00 20 10 0 25 0.00 25 11 1 24 4.00 25 12 2 21 8.70 23 13 1 26 3.70 27 14 1 26 3.70 27 15 0 15 0.00 15 16 1 32 3.03 33 17 0 39 0.00 39 18 0 23 0.00 23 19 0 25 0.00 25 20 0 31 0.00 31 21 3 25 10.71 28 22 0 20 0.00 20 23 0 26 0.00 26 24 1 30 3.23 31 25 2 37 5.13 39 26 0 34 0.00 34 27 1 34 2.86 35 28 1 36 2.70 37 29 1 34 2.86 35 30 0 28 0.00 28 31 0 25 0.00 25 32 1 24 4.00 25 33 2 35 5.41 37 34 0 27 0.00 27 35 0 30 0.00 30 36 0 20 0.00 20 37 2 32 5.88 34 38 0 34 0.00 34 39 0 26 0.00 26 40 0 30 0.00 30 41 1 27 3.57 28 42 0 26 0.00 26 43 0 28 0.00 28 44 0 32 0.00 32 45 1 21 4.55 22 46 0 22 0.00 22 47 1 30 3.23 31 48 0 27 0.00 27 49 0 27 0.00 27 50 0 15 0.00 15 51 1 23 4.17 24 52 0 22 0.00 22 53 0 29 0.00 29 54 2 24 7.69 26 55 0 25 0.00 25 56 0 20 0.00 20 57 1 24 4.00 25 58 0 26 0.00 26 59 0 22 0.00 22 60 1 25 3.85 26 61 0 28 0.00 28 62 0 32 0.00 32 63 0 33 0.00 33 64 0 30 0.00 30 65 1 24 4.00 25 66 0 25 0.00 25 67 1 35 2.78 36 68 0 22 0.00 22 69 1 24 4.00 25 70 0 29 0.00 29 71 0 25 0.00 25 72 0 19 0.00 19 73 0 30 0.00 30 74 0 23 0.00 23 75 0 16 0.00 16 76 0 18 0.00 18 77 0 18 0.00 18 78 1 20 4.76 21 79 0 25 0.00 25 80 0 23 0.00 23 81 0 14 0.00 14 82 1 26 3.70 27 83 1 23 4.17 24 84 1 20 4.76 21 85 1 22 4.35 23 86 0 9 0.00 9 87 0 19 0.00 19 88 1 22 4.35 23 89 1 16 5.88 17 90 1 8 11.11 9 91 1 15 6.25 16 92 3 17 15.00 20 93 1 15 6.25 16 94 0 16 0.00 16 95 0 20 0.00 20 96 0 19 0.00 19 97 0 13 0.00 13 98 1 13 7.14 14 99 0 8 0.00 8 100 0 12 0.00 12 101 0 18 0.00 18 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10 7 58.82 17 2 4 14 22.22 18 3 3 27 10.00 30 4 1 18 5.26 19 5 1 35 2.78 36 6 1 35 2.78 36 7 2 38 5.00 40 8 3 36 7.69 39 9 0 33 0.00 33 10 1 37 2.63 38 11 0 49 0.00 49 12 0 33 0.00 33 13 0 37 0.00 37 14 0 52 0.00 52 15 0 40 0.00 40 16 0 47 0.00 47 17 1 35 2.78 36 18 1 38 2.56 39 19 0 41 0.00 41 20 0 36 0.00 36 21 0 38 0.00 38 22 0 45 0.00 45 23 1 43 2.27 44 24 0 61 0.00 61 25 0 40 0.00 40 26 0 63 0.00 63 27 0 48 0.00 48 28 1 43 2.27 44 29 1 56 1.75 57 30 0 57 0.00 57 31 0 51 0.00 51 32 0 56 0.00 56 33 1 48 2.04 49 34 0 48 0.00 48 35 0 48 0.00 48 36 0 43 0.00 43 37 0 49 0.00 49 38 1 48 2.04 49 39 1 47 2.08 48 40 0 43 0.00 43 41 1 33 2.94 34 42 1 33 2.94 34 43 0 46 0.00 46 44 0 54 0.00 54 45 0 58 0.00 58 46 0 67 0.00 67 47 0 51 0.00 51 48 0 50 0.00 50 49 0 37 0.00 37 50 0 50 0.00 50 51 0 50 0.00 50 52 2 49 3.92 51 53 0 52 0.00 52 54 0 42 0.00 42 55 0 39 0.00 39 56 0 48 0.00 48 57 0 49 0.00 49 58 1 38 2.56 39 59 0 33 0.00 33 60 0 36 0.00 36 61 0 31 0.00 31 62 0 39 0.00 39 63 0 37 0.00 37 64 0 34 0.00 34 65 0 40 0.00 40 66 1 30 3.23 31 67 0 36 0.00 36 68 0 40 0.00 40 69 0 31 0.00 31 70 0 38 0.00 38 71 0 35 0.00 35 72 0 39 0.00 39 73 0 23 0.00 23 74 0 45 0.00 45 75 0 32 0.00 32 76 0 43 0.00 43 77 0 34 0.00 34 78 0 33 0.00 33 79 0 35 0.00 35 80 0 40 0.00 40 81 0 40 0.00 40 82 0 30 0.00 30 83 0 33 0.00 33 84 0 27 0.00 27 85 0 26 0.00 26 86 0 23 0.00 23 87 0 37 0.00 37 88 0 22 0.00 22 89 0 22 0.00 22 90 0 25 0.00 25 91 0 25 0.00 25 92 1 27 3.57 28 93 0 32 0.00 32 94 0 24 0.00 24 95 0 27 0.00 27 96 1 20 4.76 21 97 0 22 0.00 22 98 0 24 0.00 24 99 0 14 0.00 14 100 0 12 0.00 12 101 0 16 0.00 16 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 11 8.33 12 2 2 13 13.33 15 3 4 15 21.05 19 4 1 17 5.56 18 5 0 20 0.00 20 6 0 9 0.00 9 7 0 12 0.00 12 8 0 20 0.00 20 9 0 19 0.00 19 10 1 22 4.35 23 11 0 10 0.00 10 12 1 15 6.25 16 13 0 19 0.00 19 14 0 9 0.00 9 15 0 13 0.00 13 16 0 16 0.00 16 17 0 9 0.00 9 18 0 17 0.00 17 19 0 7 0.00 7 20 1 11 8.33 12 21 0 18 0.00 18 22 0 10 0.00 10 23 0 11 0.00 11 24 0 16 0.00 16 25 0 14 0.00 14 26 0 14 0.00 14 27 0 9 0.00 9 28 0 7 0.00 7 29 0 10 0.00 10 30 0 9 0.00 9 31 0 10 0.00 10 32 1 17 5.56 18 33 0 6 0.00 6 34 0 11 0.00 11 35 0 8 0.00 8 36 0 7 0.00 7 37 0 11 0.00 11 38 1 11 8.33 12 39 0 4 0.00 4 40 0 5 0.00 5 41 0 6 0.00 6 42 0 9 0.00 9 43 0 7 0.00 7 44 0 9 0.00 9 45 0 6 0.00 6 46 0 5 0.00 5 47 0 9 0.00 9 48 0 7 0.00 7 49 0 5 0.00 5 50 0 9 0.00 9 51 0 3 0.00 3 52 0 7 0.00 7 53 0 5 0.00 5 54 0 2 0.00 2 55 0 5 0.00 5 56 0 4 0.00 4 57 0 6 0.00 6 58 0 8 0.00 8 59 0 6 0.00 6 60 0 3 0.00 3 61 0 2 0.00 2 62 0 2 0.00 2 63 0 3 0.00 3 64 0 8 0.00 8 65 0 8 0.00 8 66 0 7 0.00 7 67 0 3 0.00 3 68 0 4 0.00 4 69 0 5 0.00 5 70 0 4 0.00 4 71 0 4 0.00 4 72 0 3 0.00 3 73 0 3 0.00 3 74 0 3 0.00 3 75 0 6 0.00 6 76 0 2 0.00 2 77 0 11 0.00 11 78 0 2 0.00 2 79 0 5 0.00 5 80 0 4 0.00 4 81 0 3 0.00 3 82 0 3 0.00 3 83 0 5 0.00 5 84 0 1 0.00 1 85 0 6 0.00 6 86 0 4 0.00 4 87 0 2 0.00 2 88 0 5 0.00 5 89 0 2 0.00 2 90 0 2 0.00 2 91 0 3 0.00 3 92 0 2 0.00 2 93 0 4 0.00 4 94 1 2 33.33 3 95 0 1 0.00 1 96 0 4 0.00 4 97 0 3 0.00 3 98 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 8 11.11 9 2 1 20 4.76 21 3 3 18 14.29 21 4 1 10 9.09 11 5 0 29 0.00 29 6 0 20 0.00 20 7 0 9 0.00 9 8 1 11 8.33 12 9 0 19 0.00 19 10 0 22 0.00 22 11 0 16 0.00 16 12 0 8 0.00 8 13 0 11 0.00 11 14 0 17 0.00 17 15 1 14 6.67 15 16 0 6 0.00 6 17 0 9 0.00 9 18 0 14 0.00 14 19 0 13 0.00 13 20 0 9 0.00 9 21 0 9 0.00 9 22 0 10 0.00 10 23 0 6 0.00 6 24 0 7 0.00 7 25 0 8 0.00 8 26 1 6 14.29 7 27 0 15 0.00 15 28 0 17 0.00 17 29 0 14 0.00 14 30 0 7 0.00 7 31 0 11 0.00 11 32 0 7 0.00 7 33 0 12 0.00 12 34 0 11 0.00 11 35 0 8 0.00 8 36 0 9 0.00 9 37 0 8 0.00 8 38 0 9 0.00 9 39 0 8 0.00 8 40 0 5 0.00 5 41 0 11 0.00 11 42 0 8 0.00 8 43 0 3 0.00 3 44 0 7 0.00 7 45 0 10 0.00 10 46 0 5 0.00 5 47 0 9 0.00 9 48 0 12 0.00 12 49 0 4 0.00 4 50 0 6 0.00 6 51 0 7 0.00 7 52 0 6 0.00 6 53 0 9 0.00 9 54 0 10 0.00 10 55 0 4 0.00 4 56 0 7 0.00 7 57 0 8 0.00 8 58 0 5 0.00 5 59 0 5 0.00 5 60 0 7 0.00 7 61 0 3 0.00 3 62 0 5 0.00 5 63 1 1 50.00 2 64 0 5 0.00 5 65 0 5 0.00 5 66 0 0 0 67 0 2 0.00 2 68 0 10 0.00 10 69 0 6 0.00 6 70 0 7 0.00 7 71 0 2 0.00 2 72 0 6 0.00 6 73 0 3 0.00 3 74 0 4 0.00 4 75 0 4 0.00 4 76 0 4 0.00 4 77 1 3 25.00 4 78 0 5 0.00 5 79 0 4 0.00 4 80 0 0 0 81 0 1 0.00 1 82 0 4 0.00 4 83 0 0 0 84 0 7 0.00 7 85 1 6 14.29 7 86 0 6 0.00 6 87 0 2 0.00 2 88 0 4 0.00 4 89 0 4 0.00 4 90 0 2 0.00 2 91 0 4 0.00 4 92 0 4 0.00 4 93 0 4 0.00 4 94 0 2 0.00 2 95 0 2 0.00 2 96 0 2 0.00 2 97 0 1 0.00 1 98 0 5 0.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 8 11.11 9 2 3 5 37.50 8 3 0 6 0.00 6 4 0 12 0.00 12 5 0 10 0.00 10 6 0 16 0.00 16 7 0 13 0.00 13 8 0 23 0.00 23 9 0 18 0.00 18 10 0 25 0.00 25 11 0 25 0.00 25 12 0 20 0.00 20 13 1 22 4.35 23 14 0 24 0.00 24 15 0 21 0.00 21 16 1 24 4.00 25 17 0 27 0.00 27 18 0 18 0.00 18 19 0 21 0.00 21 20 0 16 0.00 16 21 1 17 5.56 18 22 0 14 0.00 14 23 0 16 0.00 16 24 0 20 0.00 20 25 0 12 0.00 12 26 0 17 0.00 17 27 0 19 0.00 19 28 0 12 0.00 12 29 0 21 0.00 21 30 0 9 0.00 9 31 1 18 5.26 19 32 0 19 0.00 19 33 0 23 0.00 23 34 0 15 0.00 15 35 0 16 0.00 16 36 0 12 0.00 12 37 0 12 0.00 12 38 0 8 0.00 8 39 0 16 0.00 16 40 0 15 0.00 15 41 0 9 0.00 9 42 0 8 0.00 8 43 0 13 0.00 13 44 0 10 0.00 10 45 1 11 8.33 12 46 0 15 0.00 15 47 0 11 0.00 11 48 0 9 0.00 9 49 0 8 0.00 8 50 0 12 0.00 12 51 1 10 9.09 11 52 0 13 0.00 13 53 0 7 0.00 7 54 0 9 0.00 9 55 0 9 0.00 9 56 0 9 0.00 9 57 0 11 0.00 11 58 0 6 0.00 6 59 0 10 0.00 10 60 0 16 0.00 16 61 0 11 0.00 11 62 1 6 14.29 7 63 0 14 0.00 14 64 0 14 0.00 14 65 0 12 0.00 12 66 0 12 0.00 12 67 0 7 0.00 7 68 0 10 0.00 10 69 0 13 0.00 13 70 0 9 0.00 9 71 0 7 0.00 7 72 0 6 0.00 6 73 0 7 0.00 7 74 0 8 0.00 8 75 0 5 0.00 5 76 0 4 0.00 4 77 0 7 0.00 7 78 0 4 0.00 4 79 0 11 0.00 11 80 0 7 0.00 7 81 0 7 0.00 7 82 0 6 0.00 6 83 0 6 0.00 6 84 0 3 0.00 3 85 1 6 14.29 7 86 0 5 0.00 5 87 0 8 0.00 8 88 0 6 0.00 6 89 0 4 0.00 4 90 0 7 0.00 7 91 0 2 0.00 2 92 0 5 0.00 5 93 0 4 0.00 4 94 0 4 0.00 4 95 1 8 11.11 9 96 0 8 0.00 8 97 0 0 0 98 0 3 0.00 3