/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R2_001_val_2.fq.gz
Data processed at 13:25 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
469
Pairs without alignments under any condition
99531
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19248
Methylated C's in CpG context
48
Methylated C's in CHG context
198
Methylated C's in CHH context
87
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
5447
Unmethylated C's in CHG context
5293
Unmethylated C's in CHH context
8175
Unmethylated C's in Unknown context
1
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
3.6%
Percentage methylation (CHH context)
1.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
312
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
157
original bottom strand
Deduplication
Alignments analysed
469
Unique alignments
429
Duplicates removed
40
Duplicated alignments were found at 31 different positions