CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 54 5.26 57 2 2 61 3.17 63 3 1 63 1.56 64 4 0 51 0.00 51 5 0 45 0.00 45 6 1 27 3.57 28 7 0 29 0.00 29 8 0 35 0.00 35 9 0 20 0.00 20 10 0 31 0.00 31 11 0 35 0.00 35 12 0 30 0.00 30 13 1 24 4.00 25 14 0 36 0.00 36 15 0 31 0.00 31 16 1 32 3.03 33 17 0 33 0.00 33 18 0 45 0.00 45 19 0 27 0.00 27 20 1 42 2.33 43 21 0 37 0.00 37 22 0 34 0.00 34 23 0 30 0.00 30 24 0 35 0.00 35 25 0 27 0.00 27 26 0 32 0.00 32 27 0 41 0.00 41 28 0 45 0.00 45 29 0 30 0.00 30 30 0 36 0.00 36 31 1 38 2.56 39 32 0 24 0.00 24 33 1 41 2.38 42 34 1 35 2.78 36 35 1 37 2.63 38 36 0 33 0.00 33 37 1 34 2.86 35 38 0 32 0.00 32 39 0 34 0.00 34 40 0 36 0.00 36 41 1 24 4.00 25 42 0 40 0.00 40 43 1 26 3.70 27 44 1 33 2.94 34 45 0 25 0.00 25 46 1 32 3.03 33 47 0 33 0.00 33 48 1 36 2.70 37 49 1 32 3.03 33 50 0 34 0.00 34 51 0 38 0.00 38 52 0 33 0.00 33 53 0 34 0.00 34 54 1 37 2.63 38 55 0 36 0.00 36 56 0 33 0.00 33 57 1 26 3.70 27 58 1 37 2.63 38 59 0 48 0.00 48 60 0 29 0.00 29 61 0 33 0.00 33 62 1 27 3.57 28 63 0 30 0.00 30 64 0 23 0.00 23 65 0 28 0.00 28 66 0 27 0.00 27 67 1 27 3.57 28 68 0 22 0.00 22 69 1 24 4.00 25 70 1 33 2.94 34 71 0 22 0.00 22 72 0 38 0.00 38 73 0 27 0.00 27 74 1 25 3.85 26 75 0 18 0.00 18 76 0 23 0.00 23 77 0 22 0.00 22 78 0 28 0.00 28 79 0 32 0.00 32 80 0 22 0.00 22 81 0 39 0.00 39 82 0 23 0.00 23 83 0 23 0.00 23 84 0 25 0.00 25 85 0 25 0.00 25 86 0 19 0.00 19 87 0 25 0.00 25 88 1 25 3.85 26 89 0 22 0.00 22 90 0 13 0.00 13 91 0 29 0.00 29 92 1 22 4.35 23 93 0 23 0.00 23 94 0 19 0.00 19 95 0 14 0.00 14 96 0 20 0.00 20 97 0 21 0.00 21 98 0 21 0.00 21 99 0 16 0.00 16 100 0 23 0.00 23 101 0 27 0.00 27 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 37 25 59.68 62 2 27 23 54.00 50 3 10 27 27.03 37 4 5 36 12.20 41 5 4 22 15.38 26 6 4 22 15.38 26 7 0 39 0.00 39 8 1 29 3.33 30 9 1 37 2.63 38 10 1 29 3.33 30 11 2 42 4.55 44 12 3 21 12.50 24 13 1 34 2.86 35 14 0 24 0.00 24 15 0 37 0.00 37 16 0 33 0.00 33 17 1 39 2.50 40 18 0 29 0.00 29 19 0 27 0.00 27 20 1 34 2.86 35 21 0 32 0.00 32 22 1 37 2.63 38 23 0 49 0.00 49 24 0 33 0.00 33 25 0 34 0.00 34 26 0 37 0.00 37 27 0 39 0.00 39 28 1 39 2.50 40 29 1 46 2.13 47 30 1 38 2.56 39 31 0 30 0.00 30 32 1 37 2.63 38 33 0 42 0.00 42 34 0 37 0.00 37 35 0 42 0.00 42 36 0 42 0.00 42 37 1 36 2.70 37 38 1 36 2.70 37 39 1 38 2.56 39 40 1 33 2.94 34 41 0 53 0.00 53 42 0 33 0.00 33 43 0 37 0.00 37 44 0 33 0.00 33 45 0 36 0.00 36 46 1 28 3.45 29 47 1 36 2.70 37 48 0 42 0.00 42 49 0 31 0.00 31 50 2 33 5.71 35 51 0 20 0.00 20 52 1 34 2.86 35 53 0 25 0.00 25 54 0 36 0.00 36 55 0 39 0.00 39 56 1 32 3.03 33 57 0 30 0.00 30 58 1 32 3.03 33 59 1 30 3.23 31 60 0 44 0.00 44 61 1 30 3.23 31 62 0 32 0.00 32 63 0 29 0.00 29 64 0 38 0.00 38 65 0 26 0.00 26 66 0 27 0.00 27 67 0 36 0.00 36 68 1 30 3.23 31 69 1 26 3.70 27 70 0 39 0.00 39 71 1 27 3.57 28 72 1 31 3.12 32 73 0 34 0.00 34 74 0 21 0.00 21 75 0 31 0.00 31 76 1 24 4.00 25 77 2 29 6.45 31 78 2 25 7.41 27 79 0 29 0.00 29 80 0 29 0.00 29 81 0 24 0.00 24 82 0 25 0.00 25 83 0 25 0.00 25 84 0 24 0.00 24 85 2 15 11.76 17 86 0 29 0.00 29 87 1 36 2.70 37 88 4 19 17.39 23 89 1 27 3.57 28 90 1 28 3.45 29 91 1 16 5.88 17 92 1 20 4.76 21 93 1 27 3.57 28 94 0 21 0.00 21 95 0 24 0.00 24 96 1 15 6.25 16 97 0 25 0.00 25 98 1 17 5.56 18 99 1 15 6.25 16 100 3 16 15.79 19 101 3 5 37.50 8 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 16 23.81 21 2 6 15 28.57 21 3 3 33 8.33 36 4 1 28 3.45 29 5 1 42 2.33 43 6 0 40 0.00 40 7 1 34 2.86 35 8 0 51 0.00 51 9 0 51 0.00 51 10 1 48 2.04 49 11 1 51 1.92 52 12 0 42 0.00 42 13 0 53 0.00 53 14 0 49 0.00 49 15 0 55 0.00 55 16 0 57 0.00 57 17 0 53 0.00 53 18 0 61 0.00 61 19 0 60 0.00 60 20 0 50 0.00 50 21 0 53 0.00 53 22 0 55 0.00 55 23 1 45 2.17 46 24 0 68 0.00 68 25 0 62 0.00 62 26 0 69 0.00 69 27 1 65 1.52 66 28 0 57 0.00 57 29 0 77 0.00 77 30 0 56 0.00 56 31 0 52 0.00 52 32 0 74 0.00 74 33 0 58 0.00 58 34 1 57 1.72 58 35 0 49 0.00 49 36 1 46 2.13 47 37 0 55 0.00 55 38 0 58 0.00 58 39 0 51 0.00 51 40 0 56 0.00 56 41 0 42 0.00 42 42 0 54 0.00 54 43 0 42 0.00 42 44 1 43 2.27 44 45 0 50 0.00 50 46 1 66 1.49 67 47 0 60 0.00 60 48 0 54 0.00 54 49 0 39 0.00 39 50 2 63 3.08 65 51 0 60 0.00 60 52 0 49 0.00 49 53 0 63 0.00 63 54 2 52 3.70 54 55 0 53 0.00 53 56 1 44 2.22 45 57 0 46 0.00 46 58 0 48 0.00 48 59 0 45 0.00 45 60 1 43 2.27 44 61 0 38 0.00 38 62 0 47 0.00 47 63 0 43 0.00 43 64 0 55 0.00 55 65 0 35 0.00 35 66 0 52 0.00 52 67 0 47 0.00 47 68 1 56 1.75 57 69 0 43 0.00 43 70 1 41 2.38 42 71 2 43 4.44 45 72 0 45 0.00 45 73 0 44 0.00 44 74 1 49 2.00 50 75 1 47 2.08 48 76 0 51 0.00 51 77 0 38 0.00 38 78 0 40 0.00 40 79 0 42 0.00 42 80 1 41 2.38 42 81 0 45 0.00 45 82 0 40 0.00 40 83 0 47 0.00 47 84 0 46 0.00 46 85 1 40 2.44 41 86 1 34 2.86 35 87 0 28 0.00 28 88 0 26 0.00 26 89 0 31 0.00 31 90 0 31 0.00 31 91 1 25 3.85 26 92 0 33 0.00 33 93 0 30 0.00 30 94 0 30 0.00 30 95 0 26 0.00 26 96 1 27 3.57 28 97 1 33 2.94 34 98 1 23 4.17 24 99 1 19 5.00 20 100 0 15 0.00 15 101 1 35 2.78 36 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 19 13.64 22 2 5 19 20.83 24 3 9 26 25.71 35 4 3 20 13.04 23 5 0 34 0.00 34 6 0 19 0.00 19 7 0 18 0.00 18 8 0 20 0.00 20 9 0 22 0.00 22 10 0 21 0.00 21 11 0 27 0.00 27 12 0 16 0.00 16 13 0 19 0.00 19 14 0 8 0.00 8 15 0 18 0.00 18 16 0 13 0.00 13 17 0 18 0.00 18 18 0 21 0.00 21 19 0 12 0.00 12 20 0 20 0.00 20 21 0 24 0.00 24 22 0 10 0.00 10 23 0 17 0.00 17 24 0 7 0.00 7 25 0 16 0.00 16 26 0 16 0.00 16 27 0 12 0.00 12 28 0 15 0.00 15 29 0 10 0.00 10 30 0 8 0.00 8 31 0 17 0.00 17 32 0 14 0.00 14 33 0 9 0.00 9 34 0 15 0.00 15 35 0 7 0.00 7 36 0 12 0.00 12 37 0 10 0.00 10 38 0 11 0.00 11 39 0 16 0.00 16 40 0 6 0.00 6 41 0 6 0.00 6 42 0 10 0.00 10 43 0 13 0.00 13 44 0 9 0.00 9 45 0 7 0.00 7 46 0 5 0.00 5 47 0 11 0.00 11 48 0 12 0.00 12 49 0 6 0.00 6 50 0 12 0.00 12 51 0 5 0.00 5 52 1 7 12.50 8 53 0 3 0.00 3 54 0 9 0.00 9 55 0 6 0.00 6 56 0 0 0 57 0 3 0.00 3 58 0 7 0.00 7 59 0 12 0.00 12 60 0 8 0.00 8 61 0 8 0.00 8 62 0 5 0.00 5 63 0 9 0.00 9 64 0 10 0.00 10 65 0 8 0.00 8 66 0 7 0.00 7 67 0 5 0.00 5 68 0 7 0.00 7 69 0 5 0.00 5 70 0 9 0.00 9 71 0 0 0 72 0 5 0.00 5 73 0 3 0.00 3 74 0 6 0.00 6 75 0 10 0.00 10 76 0 7 0.00 7 77 0 6 0.00 6 78 0 7 0.00 7 79 0 2 0.00 2 80 0 11 0.00 11 81 0 6 0.00 6 82 0 3 0.00 3 83 0 7 0.00 7 84 0 1 0.00 1 85 0 7 0.00 7 86 0 6 0.00 6 87 0 1 0.00 1 88 0 5 0.00 5 89 0 4 0.00 4 90 0 3 0.00 3 91 0 3 0.00 3 92 0 2 0.00 2 93 0 5 0.00 5 94 0 5 0.00 5 95 0 5 0.00 5 96 0 6 0.00 6 97 0 2 0.00 2 98 0 5 0.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 14 12.50 16 2 4 13 23.53 17 3 3 23 11.54 26 4 5 11 31.25 16 5 0 28 0.00 28 6 1 31 3.12 32 7 0 13 0.00 13 8 0 19 0.00 19 9 0 25 0.00 25 10 0 19 0.00 19 11 1 13 7.14 14 12 0 13 0.00 13 13 0 9 0.00 9 14 0 22 0.00 22 15 0 22 0.00 22 16 0 9 0.00 9 17 0 24 0.00 24 18 0 16 0.00 16 19 0 14 0.00 14 20 2 9 18.18 11 21 0 6 0.00 6 22 0 24 0.00 24 23 0 14 0.00 14 24 1 12 7.69 13 25 0 11 0.00 11 26 0 11 0.00 11 27 0 15 0.00 15 28 0 13 0.00 13 29 0 13 0.00 13 30 0 10 0.00 10 31 0 18 0.00 18 32 0 10 0.00 10 33 1 19 5.00 20 34 0 11 0.00 11 35 0 10 0.00 10 36 0 17 0.00 17 37 0 10 0.00 10 38 0 7 0.00 7 39 0 12 0.00 12 40 0 11 0.00 11 41 0 11 0.00 11 42 0 10 0.00 10 43 0 6 0.00 6 44 0 12 0.00 12 45 0 9 0.00 9 46 0 6 0.00 6 47 0 10 0.00 10 48 0 15 0.00 15 49 0 9 0.00 9 50 0 5 0.00 5 51 0 12 0.00 12 52 0 11 0.00 11 53 0 7 0.00 7 54 0 6 0.00 6 55 1 10 9.09 11 56 0 16 0.00 16 57 0 5 0.00 5 58 0 8 0.00 8 59 0 7 0.00 7 60 0 5 0.00 5 61 0 10 0.00 10 62 0 7 0.00 7 63 0 4 0.00 4 64 0 11 0.00 11 65 0 2 0.00 2 66 0 9 0.00 9 67 0 3 0.00 3 68 3 8 27.27 11 69 0 13 0.00 13 70 1 5 16.67 6 71 0 14 0.00 14 72 0 3 0.00 3 73 0 6 0.00 6 74 0 7 0.00 7 75 0 6 0.00 6 76 0 5 0.00 5 77 0 1 0.00 1 78 0 6 0.00 6 79 0 6 0.00 6 80 0 7 0.00 7 81 0 6 0.00 6 82 0 4 0.00 4 83 0 9 0.00 9 84 0 5 0.00 5 85 1 4 20.00 5 86 1 5 16.67 6 87 0 6 0.00 6 88 0 4 0.00 4 89 0 6 0.00 6 90 0 1 0.00 1 91 0 5 0.00 5 92 0 3 0.00 3 93 0 4 0.00 4 94 0 3 0.00 3 95 0 1 0.00 1 96 0 3 0.00 3 97 0 4 0.00 4 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 15 6.25 16 2 0 14 0.00 14 3 4 5 44.44 9 4 1 4 20.00 5 5 0 20 0.00 20 6 0 15 0.00 15 7 2 29 6.45 31 8 0 24 0.00 24 9 1 31 3.12 32 10 0 32 0.00 32 11 0 33 0.00 33 12 0 26 0.00 26 13 0 23 0.00 23 14 1 38 2.56 39 15 0 38 0.00 38 16 0 26 0.00 26 17 0 34 0.00 34 18 0 29 0.00 29 19 0 18 0.00 18 20 0 19 0.00 19 21 0 24 0.00 24 22 1 27 3.57 28 23 0 22 0.00 22 24 0 23 0.00 23 25 0 20 0.00 20 26 0 16 0.00 16 27 0 11 0.00 11 28 0 30 0.00 30 29 0 34 0.00 34 30 0 16 0.00 16 31 0 15 0.00 15 32 0 15 0.00 15 33 0 22 0.00 22 34 0 30 0.00 30 35 0 14 0.00 14 36 0 22 0.00 22 37 0 16 0.00 16 38 0 19 0.00 19 39 0 26 0.00 26 40 0 18 0.00 18 41 0 16 0.00 16 42 0 16 0.00 16 43 0 19 0.00 19 44 1 18 5.26 19 45 1 21 4.55 22 46 0 19 0.00 19 47 0 16 0.00 16 48 0 19 0.00 19 49 0 22 0.00 22 50 0 19 0.00 19 51 0 14 0.00 14 52 0 19 0.00 19 53 0 15 0.00 15 54 0 23 0.00 23 55 0 9 0.00 9 56 0 19 0.00 19 57 1 16 5.88 17 58 0 15 0.00 15 59 0 5 0.00 5 60 0 22 0.00 22 61 0 19 0.00 19 62 0 10 0.00 10 63 0 8 0.00 8 64 0 14 0.00 14 65 0 14 0.00 14 66 1 14 6.67 15 67 0 13 0.00 13 68 0 18 0.00 18 69 1 11 8.33 12 70 0 16 0.00 16 71 0 16 0.00 16 72 0 13 0.00 13 73 0 6 0.00 6 74 0 10 0.00 10 75 0 11 0.00 11 76 0 10 0.00 10 77 0 10 0.00 10 78 0 9 0.00 9 79 0 9 0.00 9 80 0 11 0.00 11 81 0 1 0.00 1 82 0 10 0.00 10 83 1 12 7.69 13 84 0 13 0.00 13 85 0 8 0.00 8 86 0 11 0.00 11 87 0 9 0.00 9 88 0 7 0.00 7 89 0 4 0.00 4 90 0 7 0.00 7 91 0 9 0.00 9 92 0 6 0.00 6 93 0 11 0.00 11 94 0 5 0.00 5 95 0 6 0.00 6 96 0 9 0.00 9 97 0 3 0.00 3 98 0 9 0.00 9