CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44803 125311 26.34 170114 2 44041 124112 26.19 168153 3 43312 123803 25.92 167115 4 42895 124423 25.64 167318 5 42698 122781 25.80 165479 6 42466 122717 25.71 165183 7 42257 125600 25.17 167857 8 44011 125092 26.03 169103 9 42499 124741 25.41 167240 10 41889 124710 25.14 166599 11 42942 122716 25.92 165658 12 42038 120070 25.93 162108 13 41763 119939 25.83 161702 14 42611 118904 26.38 161515 15 41924 118304 26.17 160228 16 41120 118943 25.69 160063 17 40580 116907 25.77 157487 18 40645 116775 25.82 157420 19 41719 119865 25.82 161584 20 41753 117741 26.18 159494 21 42256 118804 26.24 161060 22 42521 120117 26.14 162638 23 41937 118648 26.12 160585 24 41677 117308 26.21 158985 25 42032 117162 26.40 159194 26 42261 117099 26.52 159360 27 41796 114617 26.72 156413 28 41505 114721 26.57 156226 29 42260 115683 26.76 157943 30 41195 114898 26.39 156093 31 41314 114486 26.52 155800 32 41372 116693 26.17 158065 33 39907 110679 26.50 150586 34 39499 109873 26.44 149372 35 39397 107906 26.75 147303 36 38390 106565 26.48 144955 37 38593 108532 26.23 147125 38 38601 107414 26.44 146015 39 38753 106000 26.77 144753 40 37538 105569 26.23 143107 41 37439 103876 26.49 141315 42 36709 104573 25.98 141282 43 36509 103110 26.15 139619 44 36336 101657 26.33 137993 45 36189 101179 26.34 137368 46 36559 100956 26.59 137515 47 35841 98535 26.67 134376 48 34885 97571 26.34 132456 49 34690 97224 26.30 131914 50 34282 96201 26.27 130483 51 33523 94579 26.17 128102 52 33098 94414 25.96 127512 53 32984 91966 26.40 124950 54 32403 91164 26.22 123567 55 31899 90743 26.01 122642 56 31413 89827 25.91 121240 57 31600 88268 26.36 119868 58 31317 88818 26.07 120135 59 30876 86889 26.22 117765 60 30169 86796 25.79 116965 61 29902 86069 25.78 115971 62 29111 84632 25.59 113743 63 29741 84810 25.96 114551 64 28865 83988 25.58 112853 65 28424 82423 25.64 110847 66 27863 81153 25.56 109016 67 26874 79997 25.15 106871 68 27211 80307 25.31 107518 69 26655 78705 25.30 105360 70 26458 78512 25.21 104970 71 25793 76828 25.13 102621 72 25704 76272 25.21 101976 73 25631 75956 25.23 101587 74 25135 75800 24.90 100935 75 24689 73801 25.07 98490 76 24788 74320 25.01 99108 77 23709 71328 24.95 95037 78 22358 66982 25.03 89340 79 17776 52106 25.44 69882 80 22770 66533 25.50 89303 81 21163 66084 24.26 87247 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2387 254182 0.93 256569 2 2526 251301 1.00 253827 3 2413 254934 0.94 257347 4 2338 257836 0.90 260174 5 2328 252589 0.91 254917 6 2703 252578 1.06 255281 7 2375 257117 0.92 259492 8 2605 253937 1.02 256542 9 2803 256561 1.08 259364 10 2623 258922 1.00 261545 11 2741 252168 1.08 254909 12 2599 254933 1.01 257532 13 2531 255122 0.98 257653 14 2397 252466 0.94 254863 15 2446 252145 0.96 254591 16 2294 253986 0.90 256280 17 2446 248561 0.97 251007 18 2478 252708 0.97 255186 19 2560 252243 1.00 254803 20 2558 250327 1.01 252885 21 2754 251310 1.08 254064 22 2947 251472 1.16 254419 23 2733 245816 1.10 248549 24 2880 248981 1.14 251861 25 2935 247891 1.17 250826 26 2859 245766 1.15 248625 27 2837 244006 1.15 246843 28 3044 248893 1.21 251937 29 2853 242584 1.16 245437 30 2932 242613 1.19 245545 31 3036 244367 1.23 247403 32 3049 241254 1.25 244303 33 3103 237716 1.29 240819 34 3113 239286 1.28 242399 35 3075 234430 1.29 237505 36 3104 235578 1.30 238682 37 3152 233011 1.33 236163 38 3052 230282 1.31 233334 39 3032 231082 1.30 234114 40 2958 228650 1.28 231608 41 3097 226954 1.35 230051 42 3071 225844 1.34 228915 43 3023 223315 1.34 226338 44 3120 221545 1.39 224665 45 3249 220120 1.45 223369 46 2981 216180 1.36 219161 47 2992 210242 1.40 213234 48 3090 210519 1.45 213609 49 3081 209224 1.45 212305 50 3006 204923 1.45 207929 51 2875 203657 1.39 206532 52 2807 201720 1.37 204527 53 2744 199150 1.36 201894 54 2969 198498 1.47 201467 55 2806 197632 1.40 200438 56 2763 191390 1.42 194153 57 2867 191163 1.48 194030 58 2692 189167 1.40 191859 59 2738 183313 1.47 186051 60 2716 183745 1.46 186461 61 2725 181084 1.48 183809 62 2582 178592 1.43 181174 63 2642 179924 1.45 182566 64 2687 179444 1.48 182131 65 2768 175389 1.55 178157 66 2600 174951 1.46 177551 67 2567 175273 1.44 177840 68 2763 170882 1.59 173645 69 2477 168907 1.45 171384 70 2592 168316 1.52 170908 71 2506 165549 1.49 168055 72 2579 165815 1.53 168394 73 2690 163653 1.62 166343 74 2513 159960 1.55 162473 75 2551 157986 1.59 160537 76 2530 156338 1.59 158868 77 2531 143506 1.73 146037 78 2224 130697 1.67 132921 79 1360 84626 1.58 85986 80 1537 85946 1.76 87483 81 3501 142214 2.40 145715 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11444 821227 1.37 832671 2 12324 824833 1.47 837157 3 13232 829082 1.57 842314 4 11399 832978 1.35 844377 5 11872 836829 1.40 848701 6 13222 840733 1.55 853955 7 11580 845501 1.35 857081 8 11692 846388 1.36 858080 9 13529 846077 1.57 859606 10 11955 839641 1.40 851596 11 12329 830132 1.46 842461 12 13526 830250 1.60 843776 13 11982 829788 1.42 841770 14 12853 836210 1.51 849063 15 13384 829642 1.59 843026 16 11377 834841 1.34 846218 17 11732 825782 1.40 837514 18 12954 828050 1.54 841004 19 11226 821384 1.35 832610 20 11500 816709 1.39 828209 21 12960 820792 1.55 833752 22 11779 821048 1.41 832827 23 12284 809622 1.49 821906 24 13014 811700 1.58 824714 25 11576 802793 1.42 814369 26 11502 801753 1.41 813255 27 12818 796771 1.58 809589 28 11137 792902 1.39 804039 29 11409 784092 1.43 795501 30 12554 777040 1.59 789594 31 11013 767827 1.41 778840 32 11692 763662 1.51 775354 33 12417 753874 1.62 766291 34 11171 751612 1.46 762783 35 11270 745077 1.49 756347 36 12463 742094 1.65 754557 37 10772 744715 1.43 755487 38 11113 737738 1.48 748851 39 12403 735344 1.66 747747 40 10548 726361 1.43 736909 41 11156 718878 1.53 730034 42 11709 707478 1.63 719187 43 10636 702545 1.49 713181 44 11191 695144 1.58 706335 45 11762 691117 1.67 702879 46 10338 683689 1.49 694027 47 10565 679022 1.53 689587 48 11465 674251 1.67 685716 49 10127 666983 1.50 677110 50 10165 658680 1.52 668845 51 11232 653048 1.69 664280 52 9711 650302 1.47 660013 53 10699 638565 1.65 649264 54 10907 636933 1.68 647840 55 9826 629418 1.54 639244 56 9722 627078 1.53 636800 57 11003 618323 1.75 629326 58 9227 612229 1.48 621456 59 9697 608224 1.57 617921 60 10462 601708 1.71 612170 61 9276 590514 1.55 599790 62 9696 583964 1.63 593660 63 10315 581845 1.74 592160 64 9384 574754 1.61 584138 65 9540 564670 1.66 574210 66 9924 557401 1.75 567325 67 8786 553294 1.56 562080 68 9221 547440 1.66 556661 69 9737 541096 1.77 550833 70 8549 536337 1.57 544886 71 8942 529011 1.66 537953 72 9317 525393 1.74 534710 73 8266 517539 1.57 525805 74 8384 511605 1.61 519989 75 9312 503984 1.81 513296 76 8068 492920 1.61 500988 77 7914 479373 1.62 487287 78 8398 444102 1.86 452500 79 4943 307207 1.58 312150 80 5352 273809 1.92 279161 81 8462 451848 1.84 460310 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17586 59127 22.92 76713 2 17489 59901 22.60 77390 3 16856 58650 22.32 75506 4 16063 55323 22.50 71386 5 17636 58963 23.02 76599 6 16653 55700 23.02 72353 7 17514 56892 23.54 74406 8 16489 54593 23.20 71082 9 16899 55943 23.20 72842 10 16194 53053 23.39 69247 11 15673 52422 23.02 68095 12 15135 48931 23.62 64066 13 17143 49480 25.73 66623 14 15658 50255 23.76 65913 15 18474 52112 26.17 70586 16 15905 47072 25.26 62977 17 15894 47153 25.21 63047 18 14605 45517 24.29 60122 19 14903 44437 25.11 59340 20 15880 44383 26.35 60263 21 14333 44133 24.52 58466 22 14210 44659 24.14 58869 23 14538 43188 25.18 57726 24 13475 42177 24.21 55652 25 16166 45591 26.18 61757 26 13282 39100 25.36 52382 27 13547 39919 25.34 53466 28 13323 40268 24.86 53591 29 13091 40209 24.56 53300 30 12370 38110 24.50 50480 31 12374 37244 24.94 49618 32 12395 38105 24.54 50500 33 12721 36439 25.88 49160 34 12454 36740 25.32 49194 35 12605 36758 25.54 49363 36 11601 35180 24.80 46781 37 11912 35841 24.95 47753 38 11758 34688 25.32 46446 39 11348 33474 25.32 44822 40 11566 34054 25.35 45620 41 10403 32453 24.27 42856 42 10472 32200 24.54 42672 43 11257 31563 26.29 42820 44 10698 30823 25.77 41521 45 10311 29341 26.00 39652 46 11042 30318 26.70 41360 47 10034 31412 24.21 41446 48 10661 31519 25.28 42180 49 10004 28710 25.84 38714 50 9707 28771 25.23 38478 51 9991 27477 26.67 37468 52 9109 27215 25.08 36324 53 9272 27525 25.20 36797 54 8396 26173 24.29 34569 55 8719 26050 25.08 34769 56 8809 25441 25.72 34250 57 8476 25219 25.16 33695 58 8855 25413 25.84 34268 59 8403 25320 24.92 33723 60 8159 24226 25.19 32385 61 7965 24047 24.88 32012 62 8071 24290 24.94 32361 63 8228 23257 26.13 31485 64 8753 25080 25.87 33833 65 7593 23329 24.56 30922 66 7649 22808 25.11 30457 67 7623 22027 25.71 29650 68 7617 21764 25.92 29381 69 7752 22291 25.80 30043 70 7635 22287 25.52 29922 71 7160 21600 24.90 28760 72 7096 21095 25.17 28191 73 7234 21045 25.58 28279 74 7212 20531 26.00 27743 75 7280 20742 25.98 28022 76 7155 20491 25.88 27646 77 7559 21594 25.93 29153 78 6681 18993 26.02 25674 79 6101 0 100.00 6101 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1566 118493 1.30 120059 2 1276 126811 1.00 128087 3 1072 127830 0.83 128902 4 1062 115969 0.91 117031 5 1088 117518 0.92 118606 6 1349 122712 1.09 124061 7 1429 114264 1.24 115693 8 1521 109246 1.37 110767 9 1951 115565 1.66 117516 10 2011 111041 1.78 113052 11 2017 107092 1.85 109109 12 2094 108450 1.89 110544 13 2024 121786 1.63 123810 14 1726 103941 1.63 105667 15 1401 106792 1.29 108193 16 1166 105009 1.10 106175 17 1040 97346 1.06 98386 18 954 101555 0.93 102509 19 967 95765 1.00 96732 20 962 94753 1.01 95715 21 826 91400 0.90 92226 22 867 87140 0.99 88007 23 869 89380 0.96 90249 24 826 89188 0.92 90014 25 805 83747 0.95 84552 26 816 83702 0.97 84518 27 866 85889 1.00 86755 28 793 82046 0.96 82839 29 821 84847 0.96 85668 30 757 82449 0.91 83206 31 780 77726 0.99 78506 32 783 76011 1.02 76794 33 805 84291 0.95 85096 34 705 77462 0.90 78167 35 711 76468 0.92 77179 36 789 76407 1.02 77196 37 849 72587 1.16 73436 38 772 71721 1.06 72493 39 702 73037 0.95 73739 40 757 71385 1.05 72142 41 696 70427 0.98 71123 42 715 71786 0.99 72501 43 731 70487 1.03 71218 44 667 66076 1.00 66743 45 679 68125 0.99 68804 46 641 63918 0.99 64559 47 679 67570 0.99 68249 48 609 65247 0.92 65856 49 645 65158 0.98 65803 50 631 64239 0.97 64870 51 602 65350 0.91 65952 52 593 61051 0.96 61644 53 566 59854 0.94 60420 54 547 61818 0.88 62365 55 568 59251 0.95 59819 56 482 56959 0.84 57441 57 526 59182 0.88 59708 58 533 55804 0.95 56337 59 546 55770 0.97 56316 60 490 54470 0.89 54960 61 480 52899 0.90 53379 62 486 51616 0.93 52102 63 530 52711 1.00 53241 64 452 50986 0.88 51438 65 528 55050 0.95 55578 66 451 50089 0.89 50540 67 455 49450 0.91 49905 68 440 47284 0.92 47724 69 516 49532 1.03 50048 70 515 48630 1.05 49145 71 453 50578 0.89 51031 72 465 48108 0.96 48573 73 464 46147 1.00 46611 74 425 45173 0.93 45598 75 448 46505 0.95 46953 76 436 44191 0.98 44627 77 401 43170 0.92 43571 78 340 42792 0.79 43132 79 271 0 100.00 271 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6119 425825 1.42 431944 2 5892 412870 1.41 418762 3 5786 404535 1.41 410321 4 5460 388993 1.38 394453 5 5889 385826 1.50 391715 6 5591 380167 1.45 385758 7 6042 402127 1.48 408169 8 5892 382546 1.52 388438 9 6110 372923 1.61 379033 10 6267 361697 1.70 367964 11 6363 354251 1.76 360614 12 6088 343990 1.74 350078 13 6350 339149 1.84 345499 14 6204 333916 1.82 340120 15 6194 341126 1.78 347320 16 5392 336579 1.58 341971 17 5052 333615 1.49 338667 18 5192 344890 1.48 350082 19 4917 319701 1.51 324618 20 4944 330797 1.47 335741 21 4511 313905 1.42 318416 22 4432 318245 1.37 322677 23 4371 304889 1.41 309260 24 4249 302833 1.38 307082 25 4288 300370 1.41 304658 26 4325 305301 1.40 309626 27 4164 297179 1.38 301343 28 4075 290839 1.38 294914 29 3926 293580 1.32 297506 30 3959 288496 1.35 292455 31 3996 282205 1.40 286201 32 3735 270414 1.36 274149 33 3617 268564 1.33 272181 34 3487 263002 1.31 266489 35 3665 268064 1.35 271729 36 3455 260947 1.31 264402 37 3535 266613 1.31 270148 38 3379 257066 1.30 260445 39 3366 248313 1.34 251679 40 3334 254991 1.29 258325 41 3344 243190 1.36 246534 42 3292 241490 1.34 244782 43 3224 242726 1.31 245950 44 3217 234522 1.35 237739 45 3191 235345 1.34 238536 46 2995 228126 1.30 231121 47 3026 228009 1.31 231035 48 3083 234170 1.30 237253 49 3000 226128 1.31 229128 50 2839 220176 1.27 223015 51 2894 216809 1.32 219703 52 2850 214009 1.31 216859 53 2910 212395 1.35 215305 54 2782 212606 1.29 215388 55 2698 210409 1.27 213107 56 2691 203405 1.31 206096 57 2673 201048 1.31 203721 58 2635 201456 1.29 204091 59 2696 203135 1.31 205831 60 2611 196471 1.31 199082 61 2722 196673 1.37 199395 62 2640 193146 1.35 195786 63 2451 191850 1.26 194301 64 2531 188477 1.33 191008 65 2421 186942 1.28 189363 66 2351 185728 1.25 188079 67 2326 183171 1.25 185497 68 2326 177843 1.29 180169 69 2253 177481 1.25 179734 70 2226 175544 1.25 177770 71 2212 173774 1.26 175986 72 2095 172686 1.20 174781 73 2195 170468 1.27 172663 74 2077 167454 1.23 169531 75 2081 164268 1.25 166349 76 2076 161539 1.27 163615 77 1977 160432 1.22 162409 78 1664 153630 1.07 155294 79 1189 0 100.00 1189