/gscratch/scrubbed/sr320/0924/EPI-170_S13_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-170_S13_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
27965199
Paired-end alignments with a unique best hit
9838839
Pairs without alignments under any condition
15019108
Pairs that did not map uniquely
3107252
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
225533821
Methylated C's in CpG context
7206109
Methylated C's in CHG context
672061
Methylated C's in CHH context
2203353
Methylated C's in Unknown context
24430
Unmethylated C's in CpG context
23463775
Unmethylated C's in CHG context
46888524
Unmethylated C's in CHH context
145099999
Unmethylated C's in Unknown context
469468
Percentage methylation (CpG context)
23.5%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4818414
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5020425
original bottom strand
Deduplication
Alignments analysed
9838839
Unique alignments
7528619
Duplicates removed
2310220
Duplicated alignments were found at 1334576 different positions
