CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39268 99280 28.34 138548 2 38579 98161 28.21 136740 3 38298 98201 28.06 136499 4 37741 98162 27.77 135903 5 37892 97970 27.89 135862 6 37477 97237 27.82 134714 7 37331 99544 27.27 136875 8 38840 99925 27.99 138765 9 37967 99195 27.68 137162 10 37509 99562 27.36 137071 11 37950 98042 27.91 135992 12 37281 95566 28.06 132847 13 37697 96262 28.14 133959 14 38257 96043 28.49 134300 15 37010 95202 27.99 132212 16 36947 95870 27.82 132817 17 35940 94608 27.53 130548 18 36073 94458 27.64 130531 19 37479 96603 27.95 134082 20 37269 95247 28.12 132516 21 37682 95019 28.40 132701 22 38482 96974 28.41 135456 23 37584 94971 28.35 132555 24 37065 94186 28.24 131251 25 37800 94422 28.59 132222 26 37832 94634 28.56 132466 27 37040 92482 28.60 129522 28 36317 92710 28.15 129027 29 37746 92320 29.02 130066 30 36597 93470 28.14 130067 31 36686 92566 28.38 129252 32 37011 94224 28.20 131235 33 35711 90281 28.34 125992 34 35630 89928 28.38 125558 35 34685 87409 28.41 122094 36 34279 86993 28.27 121272 37 34536 87848 28.22 122384 38 34437 87667 28.20 122104 39 34553 86440 28.56 120993 40 34034 86535 28.23 120569 41 33890 84831 28.55 118721 42 33146 85720 27.89 118866 43 33204 84500 28.21 117704 44 32116 83079 27.88 115195 45 32125 82482 28.03 114607 46 33124 83203 28.47 116327 47 32353 81108 28.51 113461 48 31529 80660 28.10 112189 49 31130 79854 28.05 110984 50 30523 79311 27.79 109834 51 30148 77335 28.05 107483 52 29890 76984 27.97 106874 53 29387 76065 27.87 105452 54 29360 75980 27.87 105340 55 28446 75854 27.27 104300 56 28525 74328 27.73 102853 57 28633 73005 28.17 101638 58 28623 73717 27.97 102340 59 27723 72308 27.71 100031 60 27614 72094 27.69 99708 61 27096 71550 27.47 98646 62 26636 70020 27.56 96656 63 26839 70061 27.70 96900 64 26532 69809 27.54 96341 65 26136 69111 27.44 95247 66 25249 67716 27.16 92965 67 24726 67345 26.86 92071 68 24953 66526 27.28 91479 69 24285 65931 26.92 90216 70 24119 65777 26.83 89896 71 23879 64116 27.14 87995 72 23567 63676 27.01 87243 73 23218 63909 26.65 87127 74 23229 62811 27.00 86040 75 22828 62423 26.78 85251 76 22723 61974 26.83 84697 77 21860 60110 26.67 81970 78 20608 56111 26.86 76719 79 16137 44341 26.68 60478 80 21011 55564 27.44 76575 81 19339 55410 25.87 74749 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2337 211753 1.09 214090 2 2475 210316 1.16 212791 3 2285 214457 1.05 216742 4 2266 215258 1.04 217524 5 2278 210083 1.07 212361 6 2844 211046 1.33 213890 7 2366 215755 1.08 218121 8 2394 213980 1.11 216374 9 2739 216655 1.25 219394 10 2392 217337 1.09 219729 11 2473 211078 1.16 213551 12 2426 214759 1.12 217185 13 2363 214473 1.09 216836 14 2321 211349 1.09 213670 15 2595 211239 1.21 213834 16 2180 213977 1.01 216157 17 2201 208563 1.04 210764 18 2494 212926 1.16 215420 19 2389 212634 1.11 215023 20 2408 210900 1.13 213308 21 2503 210921 1.17 213424 22 2431 211876 1.13 214307 23 2432 207723 1.16 210155 24 2490 209270 1.18 211760 25 2581 208733 1.22 211314 26 2622 207277 1.25 209899 27 2779 206384 1.33 209163 28 2644 210744 1.24 213388 29 2593 204697 1.25 207290 30 2825 203459 1.37 206284 31 2655 205273 1.28 207928 32 2760 204539 1.33 207299 33 2650 201103 1.30 203753 34 2889 201316 1.41 204205 35 2729 198399 1.36 201128 36 2786 198747 1.38 201533 37 2777 197778 1.38 200555 38 2659 195607 1.34 198266 39 2732 195362 1.38 198094 40 2760 194674 1.40 197434 41 2684 191674 1.38 194358 42 2887 191420 1.49 194307 43 2627 189462 1.37 192089 44 2747 187703 1.44 190450 45 3237 187225 1.70 190462 46 2743 183863 1.47 186606 47 2774 179477 1.52 182251 48 3025 179750 1.66 182775 49 2663 178578 1.47 181241 50 2664 174343 1.51 177007 51 2633 173862 1.49 176495 52 2583 173597 1.47 176180 53 2545 171478 1.46 174023 54 2739 169686 1.59 172425 55 2520 169167 1.47 171687 56 2444 163761 1.47 166205 57 2714 164292 1.63 167006 58 2474 162884 1.50 165358 59 2403 158947 1.49 161350 60 2429 158568 1.51 160997 61 2416 155977 1.53 158393 62 2403 152945 1.55 155348 63 2441 155776 1.54 158217 64 2481 154929 1.58 157410 65 2515 151618 1.63 154133 66 2433 151874 1.58 154307 67 2290 151644 1.49 153934 68 2466 147798 1.64 150264 69 2462 146352 1.65 148814 70 2394 145713 1.62 148107 71 2294 143313 1.58 145607 72 2437 143164 1.67 145601 73 2484 141407 1.73 143891 74 2430 138361 1.73 140791 75 2369 137169 1.70 139538 76 2326 135820 1.68 138146 77 2262 123920 1.79 126182 78 2028 113802 1.75 115830 79 1220 73765 1.63 74985 80 1491 74498 1.96 75989 81 3185 123590 2.51 126775 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 14938 672725 2.17 687663 2 16620 673471 2.41 690091 3 18298 675949 2.64 694247 4 15093 675697 2.18 690790 5 16622 679375 2.39 695997 6 18777 684738 2.67 703515 7 15491 688295 2.20 703786 8 15433 690666 2.19 706099 9 18867 689714 2.66 708581 10 15652 683702 2.24 699354 11 16288 675569 2.35 691857 12 18528 675320 2.67 693848 13 15819 676487 2.28 692306 14 17775 680646 2.55 698421 15 18936 674156 2.73 693092 16 15375 680660 2.21 696035 17 15346 673139 2.23 688485 18 18389 675968 2.65 694357 19 14757 669779 2.16 684536 20 15074 664990 2.22 680064 21 18147 669629 2.64 687776 22 15585 669337 2.28 684922 23 16640 662024 2.45 678664 24 17991 665228 2.63 683219 25 15580 656358 2.32 671938 26 15246 655653 2.27 670899 27 17538 652075 2.62 669613 28 14483 648568 2.18 663051 29 14924 642201 2.27 657125 30 16932 636995 2.59 653927 31 14193 629941 2.20 644134 32 15754 625805 2.46 641559 33 17445 619726 2.74 637171 34 14610 615913 2.32 630523 35 14990 611118 2.39 626108 36 17165 609303 2.74 626468 37 13989 611175 2.24 625164 38 14539 605810 2.34 620349 39 17001 605521 2.73 622522 40 13719 598478 2.24 612197 41 14934 592530 2.46 607464 42 16102 583732 2.68 599834 43 14008 579409 2.36 593417 44 15148 575340 2.57 590488 45 16105 569557 2.75 585662 46 13440 564400 2.33 577840 47 13577 559956 2.37 573533 48 15929 556892 2.78 572821 49 12910 551624 2.29 564534 50 13364 546570 2.39 559934 51 15213 544862 2.72 560075 52 12863 539986 2.33 552849 53 14443 530622 2.65 545065 54 14931 528780 2.75 543711 55 12894 523611 2.40 536505 56 12824 520445 2.40 533269 57 15271 516395 2.87 531666 58 11729 510380 2.25 522109 59 12608 505865 2.43 518473 60 14272 501479 2.77 515751 61 12477 492989 2.47 505466 62 13082 487887 2.61 500969 63 14453 487549 2.88 502002 64 12200 480010 2.48 492210 65 12503 471182 2.58 483685 66 13622 467082 2.83 480704 67 11771 462428 2.48 474199 68 11615 457745 2.47 469360 69 13308 453678 2.85 466986 70 11165 450128 2.42 461293 71 11850 443313 2.60 455163 72 12736 439787 2.81 452523 73 10831 434857 2.43 445688 74 11012 428800 2.50 439812 75 12714 423009 2.92 435723 76 10274 413149 2.43 423423 77 10081 401008 2.45 411089 78 11009 373254 2.86 384263 79 6215 258868 2.34 265083 80 7188 230605 3.02 237793 81 11077 375507 2.87 386584 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15608 48322 24.41 63930 2 16345 49682 24.76 66027 3 15183 47881 24.08 63064 4 14439 45006 24.29 59445 5 16277 47942 25.35 64219 6 14931 45884 24.55 60815 7 15996 46350 25.66 62346 8 14879 44515 25.05 59394 9 15360 45577 25.21 60937 10 14770 42625 25.73 57395 11 14284 42913 24.97 57197 12 14114 40407 25.89 54521 13 15719 40967 27.73 56686 14 14868 41814 26.23 56682 15 17406 44344 28.19 61750 16 14907 38865 27.72 53772 17 15093 40061 27.37 55154 18 13690 38390 26.29 52080 19 13858 37552 26.96 51410 20 15013 37630 28.52 52643 21 13454 37161 26.58 50615 22 13341 38319 25.82 51660 23 13284 36526 26.67 49810 24 12442 35927 25.72 48369 25 15265 38791 28.24 54056 26 11995 33076 26.61 45071 27 12485 33871 26.93 46356 28 12503 33865 26.96 46368 29 12213 34180 26.33 46393 30 11630 32178 26.55 43808 31 11416 30939 26.95 42355 32 11206 31806 26.05 43012 33 11842 30828 27.75 42670 34 11526 31512 26.78 43038 35 11709 30871 27.50 42580 36 10733 30491 26.04 41224 37 10957 30825 26.22 41782 38 10833 29740 26.70 40573 39 10511 28370 27.03 38881 40 10747 28935 27.08 39682 41 9730 27788 25.93 37518 42 9761 27163 26.44 36924 43 10444 26816 28.03 37260 44 10013 26330 27.55 36343 45 9643 25573 27.38 35216 46 10281 26191 28.19 36472 47 9461 26336 26.43 35797 48 10435 26878 27.97 37313 49 9182 24630 27.16 33812 50 8893 24428 26.69 33321 51 9068 23489 27.85 32557 52 8518 22716 27.27 31234 53 8762 23522 27.14 32284 54 7933 22569 26.01 30502 55 8083 22235 26.66 30318 56 8229 21564 27.62 29793 57 7931 21729 26.74 29660 58 8110 21617 27.28 29727 59 7567 20887 26.59 28454 60 7525 20898 26.48 28423 61 7552 20524 26.90 28076 62 7574 20604 26.88 28178 63 7681 20136 27.61 27817 64 8245 21760 27.48 30005 65 7195 19875 26.58 27070 66 7214 19848 26.66 27062 67 7143 18963 27.36 26106 68 7153 18633 27.74 25786 69 7488 19502 27.74 26990 70 7331 19251 27.58 26582 71 6746 18339 26.89 25085 72 6621 17945 26.95 24566 73 6949 17861 28.01 24810 74 6799 18033 27.38 24832 75 6666 17792 27.25 24458 76 6473 17580 26.91 24053 77 7178 18872 27.55 26050 78 6291 16234 27.93 22525 79 5577 0 100.00 5577 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1854 100870 1.80 102724 2 1433 109982 1.29 111415 3 1146 111330 1.02 112476 4 1025 99352 1.02 100377 5 1086 100733 1.07 101819 6 1365 105253 1.28 106618 7 1321 98023 1.33 99344 8 1498 93769 1.57 95267 9 1741 100108 1.71 101849 10 1754 96495 1.79 98249 11 1832 92089 1.95 93921 12 1637 93708 1.72 95345 13 1777 107397 1.63 109174 14 1528 89977 1.67 91505 15 1270 93504 1.34 94774 16 1089 92893 1.16 93982 17 916 85408 1.06 86324 18 977 90320 1.07 91297 19 927 83332 1.10 84259 20 966 81368 1.17 82334 21 838 80225 1.03 81063 22 838 75950 1.09 76788 23 869 78394 1.10 79263 24 863 77477 1.10 78340 25 803 73638 1.08 74441 26 733 73238 0.99 73971 27 894 74944 1.18 75838 28 852 71637 1.18 72489 29 855 74807 1.13 75662 30 823 72154 1.13 72977 31 805 68580 1.16 69385 32 789 65954 1.18 66743 33 785 73601 1.06 74386 34 775 67696 1.13 68471 35 687 67007 1.01 67694 36 761 66793 1.13 67554 37 872 63677 1.35 64549 38 748 62513 1.18 63261 39 749 64292 1.15 65041 40 774 62169 1.23 62943 41 713 62667 1.12 63380 42 684 63951 1.06 64635 43 736 62012 1.17 62748 44 601 57550 1.03 58151 45 726 59574 1.20 60300 46 573 55868 1.02 56441 47 686 60214 1.13 60900 48 630 57299 1.09 57929 49 561 57124 0.97 57685 50 619 57124 1.07 57743 51 595 58181 1.01 58776 52 574 53756 1.06 54330 53 569 52078 1.08 52647 54 551 54941 0.99 55492 55 587 52205 1.11 52792 56 480 50435 0.94 50915 57 577 52826 1.08 53403 58 538 49694 1.07 50232 59 533 49265 1.07 49798 60 497 47621 1.03 48118 61 514 47054 1.08 47568 62 523 45983 1.12 46506 63 479 46114 1.03 46593 64 501 44861 1.10 45362 65 519 49653 1.03 50172 66 450 44427 1.00 44877 67 475 44274 1.06 44749 68 456 41724 1.08 42180 69 448 44284 1.00 44732 70 523 43828 1.18 44351 71 494 45505 1.07 45999 72 457 43051 1.05 43508 73 406 40926 0.98 41332 74 433 40000 1.07 40433 75 449 41501 1.07 41950 76 441 38762 1.12 39203 77 456 38807 1.16 39263 78 376 38380 0.97 38756 79 261 0 100.00 261 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7924 355677 2.18 363601 2 8148 345817 2.30 353965 3 7964 338874 2.30 346838 4 7574 325236 2.28 332810 5 8042 323037 2.43 331079 6 7796 319608 2.38 327404 7 7941 339825 2.28 347766 8 7886 321952 2.39 329838 9 7965 315652 2.46 323617 10 8261 304144 2.64 312405 11 8194 298792 2.67 306986 12 7969 289597 2.68 297566 13 7937 284847 2.71 292784 14 7950 282677 2.74 290627 15 8072 290123 2.71 298195 16 6869 285486 2.35 292355 17 6730 282099 2.33 288829 18 7030 295836 2.32 302866 19 6828 271348 2.45 278176 20 6403 284016 2.20 290419 21 6392 267473 2.33 273865 22 6063 270240 2.19 276303 23 6188 257855 2.34 264043 24 5852 255276 2.24 261128 25 5744 254951 2.20 260695 26 5420 257410 2.06 262830 27 5440 251787 2.11 257227 28 5480 246067 2.18 251547 29 5341 250535 2.09 255876 30 5483 245491 2.18 250974 31 5373 239016 2.20 244389 32 5047 227928 2.17 232975 33 4846 227117 2.09 231963 34 4636 222145 2.04 226781 35 4794 229287 2.05 234081 36 4527 221101 2.01 225628 37 4616 227959 1.98 232575 38 4439 218917 1.99 223356 39 4396 210432 2.05 214828 40 4496 216451 2.03 220947 41 4447 207150 2.10 211597 42 4213 205237 2.01 209450 43 4282 206549 2.03 210831 44 4285 198900 2.11 203185 45 4109 201429 2.00 205538 46 4011 193631 2.03 197642 47 3830 194477 1.93 198307 48 4001 201515 1.95 205516 49 3924 193750 1.99 197674 50 3852 187175 2.02 191027 51 3866 184641 2.05 188507 52 3662 182281 1.97 185943 53 3783 180751 2.05 184534 54 3570 181945 1.92 185515 55 3412 179606 1.86 183018 56 3439 172423 1.96 175862 57 3477 171876 1.98 175353 58 3500 171327 2.00 174827 59 3453 174138 1.94 177591 60 3517 168250 2.05 171767 61 3507 168593 2.04 172100 62 3346 165689 1.98 169035 63 3340 164413 1.99 167753 64 3318 162605 2.00 165923 65 3036 160513 1.86 163549 66 3067 159200 1.89 162267 67 3091 156842 1.93 159933 68 2967 152487 1.91 155454 69 3020 152221 1.95 155241 70 2879 150686 1.87 153565 71 2908 148999 1.91 151907 72 2810 147980 1.86 150790 73 2768 145819 1.86 148587 74 2683 143869 1.83 146552 75 2654 140994 1.85 143648 76 2530 138812 1.79 141342 77 2427 138882 1.72 141309 78 2119 132981 1.57 135100 79 1502 0 100.00 1502