/gscratch/scrubbed/sr320/0924/EPI-169_S12_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-169_S12_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
21368558
Paired-end alignments with a unique best hit
8099481
Pairs without alignments under any condition
10769512
Pairs that did not map uniquely
2499565
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
188365927
Methylated C's in CpG context
6511388
Methylated C's in CHG context
609098
Methylated C's in CHH context
2844774
Methylated C's in Unknown context
30187
Unmethylated C's in CpG context
19075660
Unmethylated C's in CHG context
39689208
Unmethylated C's in CHH context
119635799
Unmethylated C's in Unknown context
386938
Percentage methylation (CpG context)
25.4%
Percentage methylation (CHG context)
1.5%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3966747
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4132734
original bottom strand
Deduplication
Alignments analysed
8099481
Unique alignments
6203096
Duplicates removed
1896385
Duplicated alignments were found at 1133854 different positions
