EPI-168_S11_L002_R1_001_val_1.20bp-trim_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6388240 lines in total Total number of methylation call strings processed: 12776480 Final Cytosine Methylation Report ================================= Total number of C's analysed: 108420009 Total methylated C's in CpG context: 3766086 Total methylated C's in CHG context: 261539 Total methylated C's in CHH context: 1403272 Total C to T conversions in CpG context: 9999893 Total C to T conversions in CHG context: 22034468 Total C to T conversions in CHH context: 70954751 C methylated in CpG context: 27.4% C methylated in CHG context: 1.2% C methylated in CHH context: 1.9%