CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 40351 101802 28.39 142153 2 39394 100697 28.12 140091 3 39406 100924 28.08 140330 4 38818 100848 27.79 139666 5 38435 100004 27.76 138439 6 38616 99601 27.94 138217 7 38480 101563 27.48 140043 8 39555 101262 28.09 140817 9 38181 101081 27.42 139262 10 37959 102661 26.99 140620 11 38906 100536 27.90 139442 12 38263 98477 27.98 136740 13 38275 99638 27.75 137913 14 39305 100297 28.16 139602 15 38271 99007 27.88 137278 16 37952 99867 27.54 137819 17 37247 98533 27.43 135780 18 37107 98109 27.44 135216 19 37928 100244 27.45 138172 20 37980 98598 27.81 136578 21 38307 98487 28.00 136794 22 38841 100407 27.89 139248 23 38368 98886 27.95 137254 24 37953 98500 27.81 136453 25 38464 98412 28.10 136876 26 38814 98836 28.20 137650 27 37999 96998 28.15 134997 28 37660 97479 27.87 135139 29 38949 98162 28.41 137111 30 38259 98824 27.91 137083 31 37581 98190 27.68 135771 32 38465 99711 27.84 138176 33 38054 96713 28.24 134767 34 37232 95913 27.96 133145 35 36454 94201 27.90 130655 36 36630 94099 28.02 130729 37 36491 94199 27.92 130690 38 36533 95092 27.76 131625 39 36197 93490 27.91 129687 40 35535 93670 27.50 129205 41 35999 92473 28.02 128472 42 35676 92522 27.83 128198 43 34992 91820 27.59 126812 44 34774 91575 27.52 126349 45 35131 90308 28.01 125439 46 35306 91241 27.90 126547 47 35178 89872 28.13 125050 48 34436 89816 27.71 124252 49 34452 89594 27.77 124046 50 34258 88898 27.82 123156 51 33415 86962 27.76 120377 52 33043 86943 27.54 119986 53 33129 86080 27.79 119209 54 32752 85831 27.62 118583 55 32278 85126 27.49 117404 56 31670 84756 27.20 116426 57 31842 84290 27.42 116132 58 32348 84112 27.78 116460 59 31580 82550 27.67 114130 60 30713 83084 26.99 113797 61 30920 82288 27.31 113208 62 29861 81783 26.75 111644 63 30468 80731 27.40 111199 64 30599 80304 27.59 110903 65 29915 78992 27.47 108907 66 29159 78358 27.12 107517 67 28402 77661 26.78 106063 68 28676 78037 26.87 106713 69 27989 76304 26.84 104293 70 28178 76157 27.01 104335 71 27660 74649 27.04 102309 72 27354 74059 26.97 101413 73 27174 74801 26.65 101975 74 26795 74168 26.54 100963 75 26718 73357 26.70 100075 76 26449 72838 26.64 99287 77 25895 70436 26.88 96331 78 24026 65982 26.69 90008 79 19095 52276 26.75 71371 80 24753 65949 27.29 90702 81 22598 65008 25.80 87606 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2305 218359 1.04 220664 2 2418 215947 1.11 218365 3 2366 219554 1.07 221920 4 2323 221376 1.04 223699 5 2196 215331 1.01 217527 6 2589 217112 1.18 219701 7 2264 219960 1.02 222224 8 2259 218233 1.02 220492 9 2566 221652 1.14 224218 10 2165 223724 0.96 225889 11 2235 218032 1.01 220267 12 2232 222125 0.99 224357 13 2193 222976 0.97 225169 14 2199 218602 1.00 220801 15 2403 220123 1.08 222526 16 2118 221994 0.95 224112 17 2146 216753 0.98 218899 18 2350 220885 1.05 223235 19 2057 221106 0.92 223163 20 2198 219507 0.99 221705 21 2216 218962 1.00 221178 22 2216 220455 1.00 222671 23 2321 217139 1.06 219460 24 2243 218804 1.01 221047 25 2376 218143 1.08 220519 26 2435 217841 1.11 220276 27 2396 217154 1.09 219550 28 2301 220772 1.03 223073 29 2388 215071 1.10 217459 30 2485 214638 1.14 217123 31 2351 217429 1.07 219780 32 2442 216533 1.12 218975 33 2466 212876 1.15 215342 34 2601 216242 1.19 218843 35 2478 212262 1.15 214740 36 2531 212994 1.17 215525 37 2498 212435 1.16 214933 38 2368 209208 1.12 211576 39 2587 211618 1.21 214205 40 2490 211536 1.16 214026 41 2458 207513 1.17 209971 42 2786 209278 1.31 212064 43 2557 207813 1.22 210370 44 2559 206861 1.22 209420 45 2809 205306 1.35 208115 46 2553 202626 1.24 205179 47 2575 197987 1.28 200562 48 2905 200393 1.43 203298 49 2695 199488 1.33 202183 50 2614 194967 1.32 197581 51 2499 194288 1.27 196787 52 2519 193949 1.28 196468 53 2529 193030 1.29 195559 54 2777 191142 1.43 193919 55 2598 190585 1.34 193183 56 2483 186949 1.31 189432 57 2737 186427 1.45 189164 58 2530 184795 1.35 187325 59 2466 180575 1.35 183041 60 2477 181386 1.35 183863 61 2397 178879 1.32 181276 62 2357 175533 1.32 177890 63 2609 178411 1.44 181020 64 2648 179063 1.46 181711 65 2728 174918 1.54 177646 66 2506 173789 1.42 176295 67 2478 175267 1.39 177745 68 2611 171028 1.50 173639 69 2575 169945 1.49 172520 70 2516 168649 1.47 171165 71 2432 166095 1.44 168527 72 2526 166710 1.49 169236 73 2669 163711 1.60 166380 74 2524 160363 1.55 162887 75 2535 158903 1.57 161438 76 2514 158118 1.57 160632 77 2558 144796 1.74 147354 78 2331 132409 1.73 134740 79 1433 86335 1.63 87768 80 1719 87557 1.93 89276 81 3369 143282 2.30 146651 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12643 688185 1.80 700828 2 13595 693081 1.92 706676 3 15764 694254 2.22 710018 4 12656 695076 1.79 707732 5 13484 696811 1.90 710295 6 15755 701567 2.20 717322 7 12914 706143 1.80 719057 8 12870 709292 1.78 722162 9 15788 708710 2.18 724498 10 12806 705082 1.78 717888 11 13190 698767 1.85 711957 12 14938 701853 2.08 716791 13 12838 703085 1.79 715923 14 14394 705949 2.00 720343 15 15544 699689 2.17 715233 16 12899 709664 1.79 722563 17 12965 702738 1.81 715703 18 15416 705070 2.14 720486 19 12527 700907 1.76 713434 20 12888 697578 1.81 710466 21 15342 702449 2.14 717791 22 13083 704269 1.82 717352 23 13843 698298 1.94 712141 24 15354 700848 2.14 716202 25 13162 697354 1.85 710516 26 13007 696090 1.83 709097 27 15101 692506 2.13 707607 28 12419 692179 1.76 704598 29 12965 686273 1.85 699238 30 14569 684357 2.08 698926 31 12227 679934 1.77 692161 32 13391 677715 1.94 691106 33 15163 670734 2.21 685897 34 12906 670567 1.89 683473 35 13073 664194 1.93 677267 36 15035 663533 2.22 678568 37 12317 668091 1.81 680408 38 12750 665930 1.88 678680 39 15004 665405 2.21 680409 40 12080 659759 1.80 671839 41 13053 654269 1.96 667322 42 14523 647424 2.19 661947 43 12557 644189 1.91 656746 44 13295 639569 2.04 652864 45 14685 635816 2.26 650501 46 12171 632507 1.89 644678 47 12117 628792 1.89 640909 48 14271 626995 2.23 641266 49 11748 622243 1.85 633991 50 12050 619030 1.91 631080 51 13925 614902 2.21 628827 52 11647 615064 1.86 626711 53 13009 603508 2.11 616517 54 13931 602560 2.26 616491 55 11603 598020 1.90 609623 56 11630 595199 1.92 606829 57 14058 590981 2.32 605039 58 11128 585883 1.86 597011 59 11484 582946 1.93 594430 60 13568 578216 2.29 591784 61 11553 569360 1.99 580913 62 12213 565079 2.12 577292 63 13786 562380 2.39 576166 64 11465 557584 2.01 569049 65 11787 548452 2.10 560239 66 13029 542978 2.34 556007 67 10997 540774 1.99 551771 68 11326 535010 2.07 546336 69 12725 529060 2.35 541785 70 10725 527581 1.99 538306 71 11254 519658 2.12 530912 72 12309 514133 2.34 526442 73 10566 511318 2.02 521884 74 10635 503443 2.07 514078 75 12335 496488 2.42 508823 76 9931 488682 1.99 498613 77 9811 473917 2.03 483728 78 10773 440953 2.38 451726 79 6156 305792 1.97 311948 80 6989 271724 2.51 278713 81 10943 445575 2.40 456518 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18206 54637 24.99 72843 2 18704 55409 25.24 74113 3 18001 53858 25.05 71859 4 17109 50311 25.38 67420 5 18839 53493 26.05 72332 6 17493 50712 25.65 68205 7 18530 51837 26.33 70367 8 16918 49645 25.42 66563 9 17752 51181 25.75 68933 10 17019 47918 26.21 64937 11 16130 48630 24.91 64760 12 15786 45461 25.77 61247 13 17813 46572 27.67 64385 14 16984 48713 25.85 65697 15 20472 51765 28.34 72237 16 17060 45572 27.24 62632 17 17495 47095 27.09 64590 18 15831 45131 25.97 60962 19 16348 44388 26.92 60736 20 17364 43902 28.34 61266 21 15553 43501 26.34 59054 22 15728 44547 26.09 60275 23 15555 43152 26.50 58707 24 14742 41819 26.06 56561 25 17899 46421 27.83 64320 26 14278 38761 26.92 53039 27 14596 39841 26.81 54437 28 14462 39915 26.60 54377 29 14062 40229 25.90 54291 30 13452 37672 26.31 51124 31 13315 36821 26.56 50136 32 13307 38115 25.88 51422 33 13730 36845 27.15 50575 34 13641 36893 26.99 50534 35 13710 36944 27.07 50654 36 12357 36145 25.48 48502 37 12875 36212 26.23 49087 38 12866 35471 26.62 48337 39 12100 32719 27.00 44819 40 12688 33996 27.18 46684 41 11121 32576 25.45 43697 42 11434 32298 26.15 43732 43 12212 32000 27.62 44212 44 11686 31480 27.07 43166 45 11382 29909 27.57 41291 46 11706 31006 27.41 42712 47 11022 31551 25.89 42573 48 12051 32190 27.24 44241 49 10823 28882 27.26 39705 50 10312 29032 26.21 39344 51 10659 27784 27.73 38443 52 10099 26893 27.30 36992 53 10359 27928 27.06 38287 54 9327 26479 26.05 35806 55 9434 26670 26.13 36104 56 9738 25806 27.40 35544 57 9253 25978 26.26 35231 58 9459 25645 26.95 35104 59 9033 25326 26.29 34359 60 8800 24798 26.19 33598 61 8765 24762 26.14 33527 62 8984 24557 26.79 33541 63 8947 23614 27.48 32561 64 9743 26092 27.19 35835 65 8578 23610 26.65 32188 66 8324 23410 26.23 31734 67 8270 22456 26.92 30726 68 8136 22553 26.51 30689 69 8682 23306 27.14 31988 70 8719 22667 27.78 31386 71 7884 22007 26.38 29891 72 7808 21626 26.53 29434 73 7994 21429 27.17 29423 74 8004 21368 27.25 29372 75 7897 20957 27.37 28854 76 7525 21106 26.28 28631 77 8379 22375 27.25 30754 78 7378 19509 27.44 26887 79 6518 0 100.00 6518 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1687 114848 1.45 116535 2 1336 125375 1.05 126711 3 1193 125546 0.94 126739 4 1032 112962 0.91 113994 5 1113 113965 0.97 115078 6 1231 118950 1.02 120181 7 1140 111911 1.01 113051 8 1170 107024 1.08 108194 9 1305 114016 1.13 115321 10 1283 109816 1.15 111099 11 1259 104934 1.19 106193 12 1252 107955 1.15 109207 13 1356 124902 1.07 126258 14 1206 103535 1.15 104741 15 1159 108659 1.06 109818 16 1066 107765 0.98 108831 17 907 98357 0.91 99264 18 1003 104790 0.95 105793 19 926 97656 0.94 98582 20 1011 95956 1.04 96967 21 963 93665 1.02 94628 22 837 88746 0.93 89583 23 888 92099 0.95 92987 24 902 90611 0.99 91513 25 841 85507 0.97 86348 26 811 85442 0.94 86253 27 913 87761 1.03 88674 28 858 83727 1.01 84585 29 871 87803 0.98 88674 30 893 83790 1.05 84683 31 876 79490 1.09 80366 32 814 77813 1.04 78627 33 863 85864 1.00 86727 34 812 79138 1.02 79950 35 805 78188 1.02 78993 36 764 78639 0.96 79403 37 863 75004 1.14 75867 38 761 73538 1.02 74299 39 767 75321 1.01 76088 40 840 73355 1.13 74195 41 747 73127 1.01 73874 42 759 74798 1.00 75557 43 755 73328 1.02 74083 44 706 68089 1.03 68795 45 720 70696 1.01 71416 46 634 65167 0.96 65801 47 735 71372 1.02 72107 48 679 68082 0.99 68761 49 681 67687 1.00 68368 50 697 66677 1.03 67374 51 616 68314 0.89 68930 52 623 63533 0.97 64156 53 646 61738 1.04 62384 54 616 64968 0.94 65584 55 559 61544 0.90 62103 56 642 59586 1.07 60228 57 689 62442 1.09 63131 58 583 57802 1.00 58385 59 578 58179 0.98 58757 60 577 56767 1.01 57344 61 554 54808 1.00 55362 62 546 54192 1.00 54738 63 562 55146 1.01 55708 64 538 53294 1.00 53832 65 579 58748 0.98 59327 66 528 52769 0.99 53297 67 537 52973 1.00 53510 68 523 49459 1.05 49982 69 546 51965 1.04 52511 70 569 51539 1.09 52108 71 593 53962 1.09 54555 72 488 50849 0.95 51337 73 496 48380 1.01 48876 74 503 47151 1.06 47654 75 536 48683 1.09 49219 76 486 46179 1.04 46665 77 492 46095 1.06 46587 78 422 45375 0.92 45797 79 290 0 100.00 290 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7255 410162 1.74 417417 2 7268 396250 1.80 403518 3 7295 391247 1.83 398542 4 6661 374951 1.75 381612 5 7085 372080 1.87 379165 6 6784 369300 1.80 376084 7 6958 393755 1.74 400713 8 6756 373070 1.78 379826 9 6895 364915 1.85 371810 10 6719 353905 1.86 360624 11 6817 347448 1.92 354265 12 6767 336565 1.97 343332 13 6652 332615 1.96 339267 14 6893 330410 2.04 337303 15 6933 341518 1.99 348451 16 6153 336588 1.80 342741 17 6236 333570 1.84 339806 18 6307 348371 1.78 354678 19 6071 319664 1.86 325735 20 6025 334206 1.77 340231 21 5836 315377 1.82 321213 22 5731 320962 1.75 326693 23 5934 303809 1.92 309743 24 5526 301695 1.80 307221 25 5420 302067 1.76 307487 26 5330 304132 1.72 309462 27 5264 295850 1.75 301114 28 5177 291027 1.75 296204 29 5179 296232 1.72 301411 30 5143 289405 1.75 294548 31 4920 282103 1.71 287023 32 4966 269384 1.81 274350 33 4768 268851 1.74 273619 34 4422 263094 1.65 267516 35 4734 271757 1.71 276491 36 4448 261865 1.67 266313 37 4416 269327 1.61 273743 38 4397 258914 1.67 263311 39 4297 249091 1.70 253388 40 4361 255254 1.68 259615 41 4391 243937 1.77 248328 42 4229 241556 1.72 245785 43 4146 245049 1.66 249195 44 4122 234797 1.73 238919 45 3995 238432 1.65 242427 46 4047 230154 1.73 234201 47 3851 230226 1.65 234077 48 3897 238752 1.61 242649 49 3832 230987 1.63 234819 50 3841 220531 1.71 224372 51 3812 218524 1.71 222336 52 3688 216299 1.68 219987 53 3829 214090 1.76 217919 54 3606 214685 1.65 218291 55 3544 213317 1.63 216861 56 3471 204863 1.67 208334 57 3598 204373 1.73 207971 58 3476 204424 1.67 207900 59 3497 206985 1.66 210482 60 3544 199652 1.74 203196 61 3556 201817 1.73 205373 62 3438 196329 1.72 199767 63 3336 194764 1.68 198100 64 3370 192540 1.72 195910 65 3286 190711 1.69 193997 66 3181 188182 1.66 191363 67 3035 187840 1.59 190875 68 2946 181515 1.60 184461 69 3077 178935 1.69 182012 70 2993 178515 1.65 181508 71 3086 177058 1.71 180144 72 2812 174281 1.59 177093 73 2820 172842 1.61 175662 74 2867 171491 1.64 174358 75 2766 167130 1.63 169896 76 2583 164242 1.55 166825 77 2627 164320 1.57 166947 78 2263 157780 1.41 160043 79 1589 0 100.00 1589