/gscratch/scrubbed/sr320/0924/EPI-168_S11_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-168_S11_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
22681213
Paired-end alignments with a unique best hit
8839686
Pairs without alignments under any condition
11631582
Pairs that did not map uniquely
2209945
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
219313655
Methylated C's in CpG context
7328516
Methylated C's in CHG context
595495
Methylated C's in CHH context
2626182
Methylated C's in Unknown context
26743
Unmethylated C's in CpG context
22293832
Unmethylated C's in CHG context
46305078
Unmethylated C's in CHH context
140164552
Unmethylated C's in Unknown context
468533
Percentage methylation (CpG context)
24.7%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4322133
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4517551
original bottom strand
Deduplication
Alignments analysed
8839684
Unique alignments
6388240
Duplicates removed
2451444
Duplicated alignments were found at 1460264 different positions
