EPI-167_S10_L002_R1_001_val_1.20bp-trim_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7536993 lines in total Total number of methylation call strings processed: 15073986 Final Cytosine Methylation Report ================================= Total number of C's analysed: 131400242 Total methylated C's in CpG context: 4459870 Total methylated C's in CHG context: 517777 Total methylated C's in CHH context: 2510683 Total C to T conversions in CpG context: 11908013 Total C to T conversions in CHG context: 25936927 Total C to T conversions in CHH context: 86066972 C methylated in CpG context: 27.2% C methylated in CHG context: 2.0% C methylated in CHH context: 2.8%