CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47681 119712 28.48 167393 2 46792 117453 28.49 164245 3 46606 117826 28.34 164432 4 45940 117520 28.10 163460 5 45708 116745 28.14 162453 6 45121 116166 27.98 161287 7 45123 118622 27.56 163745 8 46104 118714 27.97 164818 9 44873 117231 27.68 162104 10 44475 118860 27.23 163335 11 45310 117858 27.77 163168 12 45122 115783 28.04 160905 13 44973 117250 27.72 162223 14 45562 116968 28.03 162530 15 44950 116849 27.78 161799 16 44598 117779 27.47 162377 17 44045 114930 27.71 158975 18 43393 115019 27.39 158412 19 44536 116156 27.72 160692 20 43961 113962 27.84 157923 21 44207 115527 27.68 159734 22 45503 117464 27.92 162967 23 44792 115523 27.94 160315 24 43866 115663 27.50 159529 25 44671 115045 27.97 159716 26 45289 114677 28.31 159966 27 44464 113104 28.22 157568 28 44271 113786 28.01 158057 29 45102 115003 28.17 160105 30 44232 114667 27.84 158899 31 44340 114189 27.97 158529 32 44894 115538 27.98 160432 33 43848 112233 28.09 156081 34 43023 112037 27.75 155060 35 42663 110940 27.77 153603 36 42663 110981 27.77 153644 37 42631 111563 27.65 154194 38 42684 110775 27.81 153459 39 42905 110110 28.04 153015 40 41710 110651 27.38 152361 41 42422 109308 27.96 151730 42 41605 108318 27.75 149923 43 41214 108783 27.48 149997 44 40787 108026 27.41 148813 45 41009 107752 27.57 148761 46 41635 107299 27.96 148934 47 40772 105873 27.80 146645 48 40750 105679 27.83 146429 49 40445 105927 27.63 146372 50 40132 105255 27.60 145387 51 39146 102755 27.59 141901 52 39087 102788 27.55 141875 53 38473 101626 27.46 140099 54 38176 101458 27.34 139634 55 37790 100922 27.24 138712 56 37629 100709 27.20 138338 57 37598 99974 27.33 137572 58 37775 99403 27.54 137178 59 37275 98858 27.38 136133 60 36536 98267 27.10 134803 61 36264 97559 27.10 133823 62 35134 95808 26.83 130942 63 36350 96234 27.42 132584 64 35403 95953 26.95 131356 65 35421 94666 27.23 130087 66 34411 92935 27.02 127346 67 33381 92584 26.50 125965 68 34131 92477 26.96 126608 69 33556 90949 26.95 124505 70 33295 91413 26.70 124708 71 32512 88972 26.76 121484 72 32314 89086 26.62 121400 73 32245 88993 26.60 121238 74 32015 88063 26.66 120078 75 31358 86413 26.63 117771 76 30846 85819 26.44 116665 77 30106 83313 26.54 113419 78 28429 79053 26.45 107482 79 22228 61406 26.58 83634 80 28904 78273 26.97 107177 81 26656 78524 25.34 105180 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4980 251703 1.94 256683 2 4958 249219 1.95 254177 3 4874 254133 1.88 259007 4 4664 255953 1.79 260617 5 4584 249982 1.80 254566 6 5111 251240 1.99 256351 7 4686 254639 1.81 259325 8 4702 251550 1.83 256252 9 4990 255863 1.91 260853 10 4492 257516 1.71 262008 11 4551 252393 1.77 256944 12 4388 256065 1.68 260453 13 4625 256222 1.77 260847 14 4721 252857 1.83 257578 15 4840 254051 1.87 258891 16 4486 255834 1.72 260320 17 4527 250208 1.78 254735 18 4816 255383 1.85 260199 19 4404 254007 1.70 258411 20 4455 252808 1.73 257263 21 4631 253238 1.80 257869 22 4483 254800 1.73 259283 23 4599 250014 1.81 254613 24 4788 254503 1.85 259291 25 4759 253159 1.85 257918 26 4688 251140 1.83 255828 27 4912 251440 1.92 256352 28 4737 255537 1.82 260274 29 4687 249505 1.84 254192 30 4899 249289 1.93 254188 31 4712 251733 1.84 256445 32 4861 250776 1.90 255637 33 4978 248380 1.96 253358 34 5028 249921 1.97 254949 35 4940 247484 1.96 252424 36 5137 249441 2.02 254578 37 5044 247574 2.00 252618 38 4808 243334 1.94 248142 39 5038 245706 2.01 250744 40 5004 246446 1.99 251450 41 4854 242604 1.96 247458 42 5060 243741 2.03 248801 43 4964 242154 2.01 247118 44 4962 240000 2.03 244962 45 5414 240946 2.20 246360 46 4937 236563 2.04 241500 47 5008 234065 2.09 239073 48 5178 233949 2.17 239127 49 5004 233047 2.10 238051 50 4848 228522 2.08 233370 51 4845 229146 2.07 233991 52 4833 228349 2.07 233182 53 4971 225847 2.15 230818 54 5079 224136 2.22 229215 55 4927 224504 2.15 229431 56 4707 218475 2.11 223182 57 5030 218716 2.25 223746 58 4543 217409 2.05 221952 59 4617 213823 2.11 218440 60 4616 213178 2.12 217794 61 4740 210936 2.20 215676 62 4556 208022 2.14 212578 63 4805 209891 2.24 214696 64 4812 209828 2.24 214640 65 4877 205671 2.32 210548 66 4782 203544 2.30 208326 67 4724 205708 2.24 210432 68 4798 200988 2.33 205786 69 4741 199804 2.32 204545 70 4538 198661 2.23 203199 71 4488 196615 2.23 201103 72 4548 196069 2.27 200617 73 4807 194918 2.41 199725 74 4543 190389 2.33 194932 75 4510 188389 2.34 192899 76 4586 187182 2.39 191768 77 4328 172373 2.45 176701 78 3873 157702 2.40 161575 79 2288 102398 2.19 104686 80 2650 104424 2.47 107074 81 5508 171764 3.11 177272 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23050 816961 2.74 840011 2 24605 822078 2.91 846683 3 26788 826047 3.14 852835 4 23331 826885 2.74 850216 5 24206 826860 2.84 851066 6 27288 836531 3.16 863819 7 23102 840984 2.67 864086 8 23141 845412 2.66 868553 9 27063 846424 3.10 873487 10 22980 841258 2.66 864238 11 23758 833191 2.77 856949 12 26072 833163 3.03 859235 13 22901 836677 2.66 859578 14 25353 841115 2.93 866468 15 26669 835438 3.09 862107 16 23138 844947 2.67 868085 17 23134 836523 2.69 859657 18 26702 841461 3.08 868163 19 22615 835292 2.64 857907 20 23257 829493 2.73 852750 21 26415 837177 3.06 863592 22 23215 837703 2.70 860918 23 24576 831559 2.87 856135 24 26340 836882 3.05 863222 25 23315 831285 2.73 854600 26 23280 832273 2.72 855553 27 26020 830156 3.04 856176 28 22465 831666 2.63 854131 29 22917 823586 2.71 846503 30 25325 821510 2.99 846835 31 22115 815748 2.64 837863 32 23812 811576 2.85 835388 33 25777 807830 3.09 833607 34 22567 806098 2.72 828665 35 23004 798945 2.80 821949 36 25593 797357 3.11 822950 37 22218 799915 2.70 822133 38 22872 798729 2.78 821601 39 25614 799972 3.10 825586 40 21808 794467 2.67 816275 41 23201 789296 2.86 812497 42 25130 781347 3.12 806477 43 22219 775888 2.78 798107 44 23454 771682 2.95 795136 45 24795 768964 3.12 793759 46 21695 764032 2.76 785727 47 22068 761287 2.82 783355 48 24529 758106 3.13 782635 49 21196 755742 2.73 776938 50 21799 747278 2.83 769077 51 24234 744495 3.15 768729 52 21540 742835 2.82 764375 53 22990 731066 3.05 754056 54 23937 731940 3.17 755877 55 21059 725021 2.82 746080 56 21235 723682 2.85 744917 57 24029 717465 3.24 741494 58 20213 712131 2.76 732344 59 20713 706806 2.85 727519 60 23102 702890 3.18 725992 61 20831 693880 2.91 714711 62 21554 688342 3.04 709896 63 23038 687131 3.24 710169 64 20306 676945 2.91 697251 65 20799 665917 3.03 686716 66 22153 660850 3.24 683003 67 19588 657360 2.89 676948 68 20056 650506 2.99 670562 69 21635 645023 3.25 666658 70 19040 639830 2.89 658870 71 19646 633103 3.01 652749 72 21186 629211 3.26 650397 73 18616 623418 2.90 642034 74 19052 612774 3.02 631826 75 20908 607723 3.33 628631 76 17889 597176 2.91 615065 77 17643 580765 2.95 598408 78 18533 541414 3.31 559947 79 10945 372845 2.85 383790 80 10797 332693 3.14 343490 81 18582 547719 3.28 566301 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22399 67420 24.94 89819 2 22680 67873 25.05 90553 3 21613 65654 24.77 87267 4 20466 62269 24.74 82735 5 22513 66168 25.39 88681 6 20943 62274 25.17 83217 7 22630 63442 26.29 86072 8 20783 60321 25.63 81104 9 21071 61999 25.37 83070 10 20602 58613 26.01 79215 11 19900 58997 25.22 78897 12 19302 55029 25.97 74331 13 21594 57491 27.30 79085 14 20282 59406 25.45 79688 15 24295 62247 28.07 86542 16 20710 55835 27.06 76545 17 21228 57130 27.09 78358 18 19150 54824 25.89 73974 19 19633 53974 26.67 73607 20 20980 54233 27.89 75213 21 18768 53822 25.85 72590 22 19005 54460 25.87 73465 23 18978 52584 26.52 71562 24 18231 51059 26.31 69290 25 21175 55124 27.75 76299 26 17485 47964 26.72 65449 27 17778 49036 26.61 66814 28 17680 49399 26.36 67079 29 17324 49557 25.90 66881 30 16437 46258 26.22 62695 31 16409 45846 26.36 62255 32 16410 46573 26.05 62983 33 16342 45163 26.57 61505 34 16439 45469 26.55 61908 35 16483 45022 26.80 61505 36 15234 43831 25.79 59065 37 16120 43875 26.87 59995 38 15848 42919 26.97 58767 39 15213 41238 26.95 56451 40 15303 41919 26.74 57222 41 14138 39962 26.13 54100 42 13849 39832 25.80 53681 43 14779 39272 27.34 54051 44 14284 38809 26.90 53093 45 13454 36643 26.86 50097 46 14234 37907 27.30 52141 47 13578 38643 26.00 52221 48 14107 39243 26.44 53350 49 12949 35909 26.50 48858 50 12491 35667 25.94 48158 51 13064 34897 27.24 47961 52 12225 34110 26.38 46335 53 12708 34573 26.88 47281 54 11488 33090 25.77 44578 55 11577 33007 25.97 44584 56 11724 32186 26.70 43910 57 11467 32112 26.31 43579 58 11489 31841 26.52 43330 59 10832 31149 25.80 41981 60 10898 30932 26.05 41830 61 10832 30519 26.20 41351 62 10995 30295 26.63 41290 63 10981 29327 27.24 40308 64 11710 31530 27.08 43240 65 10387 29097 26.31 39484 66 10248 28875 26.19 39123 67 10110 27889 26.61 37999 68 10179 27689 26.88 37868 69 10635 28647 27.07 39282 70 10515 28317 27.08 38832 71 9860 27576 26.34 37436 72 9367 26696 25.97 36063 73 9724 26668 26.72 36392 74 9926 26882 26.97 36808 75 9552 26149 26.76 35701 76 9494 25920 26.81 35414 77 9921 27072 26.82 36993 78 8945 24412 26.82 33357 79 7872 0 100.00 7872 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3174 139197 2.23 142371 2 2922 149594 1.92 152516 3 2522 149580 1.66 152102 4 2274 135038 1.66 137312 5 2397 136869 1.72 139266 6 2464 143211 1.69 145675 7 2429 133998 1.78 136427 8 2265 128732 1.73 130997 9 2457 135161 1.79 137618 10 2431 131407 1.82 133838 11 2423 127326 1.87 129749 12 2391 129475 1.81 131866 13 2644 145001 1.79 147645 14 2416 125619 1.89 128035 15 2330 128329 1.78 130659 16 2258 128257 1.73 130515 17 2147 120062 1.76 122209 18 2272 124101 1.80 126373 19 2049 116284 1.73 118333 20 2116 114430 1.82 116546 21 2046 112965 1.78 115011 22 1927 107697 1.76 109624 23 1946 110265 1.73 112211 24 1974 110274 1.76 112248 25 1876 103777 1.78 105653 26 1858 104304 1.75 106162 27 1943 106416 1.79 108359 28 1838 102301 1.76 104139 29 1953 105484 1.82 107437 30 1952 102305 1.87 104257 31 1777 96565 1.81 98342 32 1688 93985 1.76 95673 33 1906 104149 1.80 106055 34 1813 96681 1.84 98494 35 1781 94512 1.85 96293 36 1687 94822 1.75 96509 37 1821 90011 1.98 91832 38 1716 89048 1.89 90764 39 1626 91444 1.75 93070 40 1724 88438 1.91 90162 41 1610 88407 1.79 90017 42 1656 89568 1.82 91224 43 1683 88637 1.86 90320 44 1474 83032 1.74 84506 45 1570 84627 1.82 86197 46 1524 80423 1.86 81947 47 1603 84607 1.86 86210 48 1437 82247 1.72 83684 49 1500 82037 1.80 83537 50 1385 81195 1.68 82580 51 1470 82387 1.75 83857 52 1382 76846 1.77 78228 53 1395 75563 1.81 76958 54 1416 77221 1.80 78637 55 1336 74539 1.76 75875 56 1297 72410 1.76 73707 57 1339 74977 1.75 76316 58 1285 70221 1.80 71506 59 1352 70758 1.87 72110 60 1253 69201 1.78 70454 61 1300 67251 1.90 68551 62 1219 66009 1.81 67228 63 1261 67154 1.84 68415 64 1161 65000 1.75 66161 65 1266 70325 1.77 71591 66 1134 64172 1.74 65306 67 1176 63765 1.81 64941 68 1040 60427 1.69 61467 69 1172 63538 1.81 64710 70 1221 62502 1.92 63723 71 1215 65053 1.83 66268 72 1149 62088 1.82 63237 73 1030 59195 1.71 60225 74 1062 57935 1.80 58997 75 1173 59625 1.93 60798 76 1059 56877 1.83 57936 77 1001 55942 1.76 56943 78 834 54556 1.51 55390 79 618 0 100.00 618 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13432 499093 2.62 512525 2 13280 486050 2.66 499330 3 13023 475242 2.67 488265 4 12280 458323 2.61 470603 5 12673 454374 2.71 467047 6 12293 450357 2.66 462650 7 12625 476479 2.58 489104 8 12188 456458 2.60 468646 9 12323 446708 2.68 459031 10 12266 435054 2.74 447320 11 11920 427720 2.71 439640 12 11765 414929 2.76 426694 13 11842 410810 2.80 422652 14 12048 406804 2.88 418852 15 12194 417741 2.84 429935 16 11288 410581 2.68 421869 17 11364 409381 2.70 420745 18 11723 423284 2.69 435007 19 11128 393691 2.75 404819 20 11133 408621 2.65 419754 21 10920 387994 2.74 398914 22 10737 391587 2.67 402324 23 10624 375774 2.75 386398 24 10408 373596 2.71 384004 25 10317 372349 2.70 382666 26 10021 376085 2.60 386106 27 9917 367859 2.63 377776 28 9990 359793 2.70 369783 29 9671 363252 2.59 372923 30 9603 357799 2.61 367402 31 9446 349762 2.63 359208 32 9160 336577 2.65 345737 33 8777 332736 2.57 341513 34 8676 326714 2.59 335390 35 8997 334121 2.62 343118 36 8584 325290 2.57 333874 37 8611 331807 2.53 340418 38 8436 322208 2.55 330644 39 8345 310106 2.62 318451 40 8444 318716 2.58 327160 41 8191 304515 2.62 312706 42 7997 302597 2.57 310594 43 8063 303844 2.59 311907 44 7897 294989 2.61 302886 45 7623 297428 2.50 305051 46 7670 286539 2.61 294209 47 7490 286376 2.55 293866 48 7669 293699 2.54 301368 49 7668 285945 2.61 293613 50 7334 276256 2.59 283590 51 7329 273514 2.61 280843 52 7108 270153 2.56 277261 53 7275 268019 2.64 275294 54 6901 268383 2.51 275284 55 6884 266758 2.52 273642 56 6714 256439 2.55 263153 57 6684 254473 2.56 261157 58 6755 254964 2.58 261719 59 6664 258006 2.52 264670 60 6688 248254 2.62 254942 61 6720 249977 2.62 256697 62 6583 245378 2.61 251961 63 6419 242930 2.57 249349 64 6384 239748 2.59 246132 65 6145 235696 2.54 241841 66 6128 234915 2.54 241043 67 6052 232200 2.54 238252 68 5908 226011 2.55 231919 69 5846 224744 2.54 230590 70 5984 222635 2.62 228619 71 5869 221012 2.59 226881 72 5465 218742 2.44 224207 73 5645 215974 2.55 221619 74 5476 214749 2.49 220225 75 5387 210561 2.49 215948 76 5054 206243 2.39 211297 77 4908 205248 2.34 210156 78 4310 195481 2.16 199791 79 2988 0 100.00 2988