/gscratch/scrubbed/sr320/0924/EPI-167_S10_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-167_S10_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
24477306
Paired-end alignments with a unique best hit
10316162
Pairs without alignments under any condition
11770881
Pairs that did not map uniquely
2390263
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
257754397
Methylated C's in CpG context
8600854
Methylated C's in CHG context
1106051
Methylated C's in CHH context
4727455
Methylated C's in Unknown context
34010
Unmethylated C's in CpG context
24449142
Unmethylated C's in CHG context
52390495
Unmethylated C's in CHH context
166480400
Unmethylated C's in Unknown context
540892
Percentage methylation (CpG context)
26.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5105614
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5210548
original bottom strand
Deduplication
Alignments analysed
10316162
Unique alignments
7536993
Duplicates removed
2779169
Duplicated alignments were found at 1780201 different positions