CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 36615 101742 26.46 138357 2 36012 99354 26.60 135366 3 35945 99879 26.46 135824 4 35310 100235 26.05 135545 5 35398 99651 26.21 135049 6 34629 98098 26.09 132727 7 34640 100969 25.54 135609 8 36105 100799 26.37 136904 9 35107 100555 25.88 135662 10 34792 100529 25.71 135321 11 35418 98637 26.42 134055 12 34335 96865 26.17 131200 13 34522 96888 26.27 131410 14 34996 96431 26.63 131427 15 34711 96644 26.43 131355 16 34278 96667 26.18 130945 17 33704 95009 26.19 128713 18 33595 94760 26.17 128355 19 34819 96852 26.44 131671 20 34549 95609 26.54 130158 21 35108 96263 26.72 131371 22 35172 97099 26.59 132271 23 34723 96274 26.51 130997 24 34358 95392 26.48 129750 25 34334 94952 26.56 129286 26 34845 94165 27.01 129010 27 34201 93002 26.89 127203 28 34139 93122 26.83 127261 29 34892 93803 27.11 128695 30 33496 94397 26.19 127893 31 34239 92860 26.94 127099 32 34339 93771 26.80 128110 33 33399 90563 26.94 123962 34 32702 90191 26.61 122893 35 32499 87596 27.06 120095 36 31942 87178 26.81 119120 37 32135 87792 26.80 119927 38 31958 88235 26.59 120193 39 31834 86321 26.94 118155 40 30951 86792 26.29 117743 41 30927 85079 26.66 116006 42 30837 84676 26.70 115513 43 29850 83429 26.35 113279 44 29851 83357 26.37 113208 45 29950 82439 26.65 112389 46 29980 82108 26.75 112088 47 29624 80011 27.02 109635 48 29012 80288 26.54 109300 49 28558 79101 26.53 107659 50 28323 78768 26.45 107091 51 28004 76968 26.68 104972 52 27393 76856 26.28 104249 53 26983 75166 26.42 102149 54 26842 75056 26.34 101898 55 26104 74042 26.07 100146 56 25772 73170 26.05 98942 57 26007 72664 26.36 98671 58 25606 72060 26.22 97666 59 25087 70754 26.18 95841 60 24832 70653 26.01 95485 61 24487 69901 25.94 94388 62 23961 69195 25.72 93156 63 24491 68945 26.21 93436 64 23771 68077 25.88 91848 65 23517 67343 25.88 90860 66 22929 65502 25.93 88431 67 22158 65194 25.37 87352 68 22418 65577 25.48 87995 69 21921 64088 25.49 86009 70 21639 63517 25.41 85156 71 21260 62059 25.52 83319 72 21075 61594 25.49 82669 73 20972 61733 25.36 82705 74 20612 61141 25.21 81753 75 20111 60097 25.07 80208 76 20430 60228 25.33 80658 77 19619 57712 25.37 77331 78 18195 54469 25.04 72664 79 14521 42485 25.47 57006 80 18637 53710 25.76 72347 81 17092 53210 24.31 70302 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2126 207237 1.02 209363 2 2246 204555 1.09 206801 3 2095 207930 1.00 210025 4 2064 210661 0.97 212725 5 2066 205354 1.00 207420 6 2429 206432 1.16 208861 7 2136 209429 1.01 211565 8 2222 207462 1.06 209684 9 2615 209678 1.23 212293 10 2286 211740 1.07 214026 11 2262 206320 1.08 208582 12 2318 208990 1.10 211308 13 2282 208717 1.08 210999 14 2120 205818 1.02 207938 15 2225 205778 1.07 208003 16 2013 208420 0.96 210433 17 2138 203375 1.04 205513 18 2233 207204 1.07 209437 19 2143 206931 1.02 209074 20 2314 205845 1.11 208159 21 2292 204681 1.11 206973 22 2323 206151 1.11 208474 23 2305 201848 1.13 204153 24 2389 204366 1.16 206755 25 2363 202400 1.15 204763 26 2515 200534 1.24 203049 27 2654 200845 1.30 203499 28 2422 203886 1.17 206308 29 2485 199098 1.23 201583 30 2677 197935 1.33 200612 31 2547 199679 1.26 202226 32 2670 197986 1.33 200656 33 2659 194599 1.35 197258 34 2700 196078 1.36 198778 35 2652 192005 1.36 194657 36 2709 193259 1.38 195968 37 2739 191162 1.41 193901 38 2520 188886 1.32 191406 39 2560 189077 1.34 191637 40 2645 188151 1.39 190796 41 2614 185194 1.39 187808 42 2671 185781 1.42 188452 43 2742 183381 1.47 186123 44 2669 181378 1.45 184047 45 2838 180623 1.55 183461 46 2665 177277 1.48 179942 47 2650 172771 1.51 175421 48 2859 174041 1.62 176900 49 2635 171135 1.52 173770 50 2483 167665 1.46 170148 51 2458 167267 1.45 169725 52 2478 165955 1.47 168433 53 2534 163105 1.53 165639 54 2639 161993 1.60 164632 55 2441 161810 1.49 164251 56 2302 156066 1.45 158368 57 2498 156287 1.57 158785 58 2349 154732 1.50 157081 59 2332 150424 1.53 152756 60 2353 150689 1.54 153042 61 2225 148352 1.48 150577 62 2290 145691 1.55 147981 63 2403 146898 1.61 149301 64 2281 146357 1.53 148638 65 2463 143208 1.69 145671 66 2308 142870 1.59 145178 67 2168 142205 1.50 144373 68 2469 139723 1.74 142192 69 2277 138481 1.62 140758 70 2238 137096 1.61 139334 71 2070 134718 1.51 136788 72 2280 134984 1.66 137264 73 2337 132528 1.73 134865 74 2172 129565 1.65 131737 75 2194 127454 1.69 129648 76 2242 126498 1.74 128740 77 2137 115939 1.81 118076 78 1954 105840 1.81 107794 79 1172 68897 1.67 70069 80 1421 69431 2.01 70852 81 2932 115054 2.49 117986 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12830 669751 1.88 682581 2 14140 672009 2.06 686149 3 15880 673914 2.30 689794 4 12881 674808 1.87 687689 5 13564 679078 1.96 692642 6 16046 683626 2.29 699672 7 13149 686191 1.88 699340 8 13077 688898 1.86 701975 9 16014 687197 2.28 703211 10 13375 682673 1.92 696048 11 13903 672971 2.02 686874 12 15682 675058 2.27 690740 13 13618 675571 1.98 689189 14 14682 679378 2.12 694060 15 15825 673108 2.30 688933 16 13125 679966 1.89 693091 17 12992 673610 1.89 686602 18 15538 675324 2.25 690862 19 12385 669503 1.82 681888 20 13068 665594 1.93 678662 21 15315 668654 2.24 683969 22 13309 669905 1.95 683214 23 13771 662566 2.04 676337 24 15273 663194 2.25 678467 25 13268 655462 1.98 668730 26 12877 654462 1.93 667339 27 15049 649605 2.26 664654 28 12343 646878 1.87 659221 29 12970 640477 1.98 653447 30 14982 635831 2.30 650813 31 12337 627433 1.93 639770 32 13371 623798 2.10 637169 33 14937 616192 2.37 631129 34 12485 614751 1.99 627236 35 12540 607126 2.02 619666 36 15001 606286 2.41 621287 37 11881 607126 1.92 619007 38 12300 602784 2.00 615084 39 14585 598931 2.38 613516 40 11670 593277 1.93 604947 41 12744 585872 2.13 598616 42 13902 576106 2.36 590008 43 11938 573755 2.04 585693 44 12830 567020 2.21 579850 45 14039 562410 2.44 576449 46 11303 555204 2.00 566507 47 11864 552321 2.10 564185 48 13467 547534 2.40 561001 49 11185 542318 2.02 553503 50 11383 536162 2.08 547545 51 13081 532044 2.40 545125 52 11151 528163 2.07 539314 53 12150 519216 2.29 531366 54 12858 516752 2.43 529610 55 10896 513109 2.08 524005 56 10964 507958 2.11 518922 57 13013 502230 2.53 515243 58 10110 495824 2.00 505934 59 10723 491871 2.13 502594 60 12286 485742 2.47 498028 61 10568 478356 2.16 488924 62 11211 472766 2.32 483977 63 12464 471140 2.58 483604 64 10409 463700 2.20 474109 65 10584 455510 2.27 466094 66 11672 451444 2.52 463116 67 9766 446704 2.14 456470 68 10265 441864 2.27 452129 69 11159 435967 2.50 447126 70 9425 432580 2.13 442005 71 10133 425406 2.33 435539 72 10679 422614 2.46 433293 73 9210 416316 2.16 425526 74 9347 411165 2.22 420512 75 10687 405757 2.57 416444 76 8774 396608 2.16 405382 77 8647 385440 2.19 394087 78 9531 357341 2.60 366872 79 5232 247973 2.07 253205 80 5976 220181 2.64 226157 81 9806 361126 2.64 370932 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13986 46346 23.18 60332 2 13932 47944 22.52 61876 3 13259 46398 22.23 59657 4 12635 43919 22.34 56554 5 13894 45850 23.26 59744 6 13038 43854 22.92 56892 7 14054 44772 23.89 58826 8 12967 42694 23.30 55661 9 13355 43478 23.50 56833 10 12883 41237 23.80 54120 11 12459 41304 23.17 53763 12 12101 38142 24.08 50243 13 13300 39142 25.36 52442 14 12776 40057 24.18 52833 15 14764 41291 26.34 56055 16 12437 36656 25.33 49093 17 12525 37306 25.13 49831 18 11579 36146 24.26 47725 19 11944 35221 25.32 47165 20 12580 35475 26.18 48055 21 11493 35189 24.62 46682 22 11460 35425 24.44 46885 23 11351 34229 24.90 45580 24 10801 33492 24.39 44293 25 12959 36054 26.44 49013 26 10567 31110 25.35 41677 27 10624 31573 25.18 42197 28 10555 31724 24.97 42279 29 10276 32069 24.27 42345 30 10026 30066 25.01 40092 31 9688 29350 24.82 39038 32 9783 30019 24.58 39802 33 9989 28709 25.81 38698 34 9618 29147 24.81 38765 35 9896 28497 25.78 38393 36 9281 28042 24.87 37323 37 9429 28164 25.08 37593 38 9392 27085 25.75 36477 39 9063 26026 25.83 35089 40 9105 26346 25.68 35451 41 8291 25816 24.31 34107 42 8077 25420 24.11 33497 43 8771 25034 25.95 33805 44 8342 24164 25.66 32506 45 8001 23281 25.58 31282 46 8517 23974 26.21 32491 47 7891 24439 24.41 32330 48 8417 24240 25.77 32657 49 7640 22607 25.26 30247 50 7336 22449 24.63 29785 51 7530 21419 26.01 28949 52 7161 20998 25.43 28159 53 7252 21708 25.04 28960 54 6603 20500 24.36 27103 55 6720 20302 24.87 27022 56 6850 19687 25.81 26537 57 6664 19534 25.44 26198 58 6508 19658 24.87 26166 59 6324 19423 24.56 25747 60 6363 18844 25.24 25207 61 6235 18814 24.89 25049 62 6416 18538 25.71 24954 63 6318 18037 25.94 24355 64 6673 19186 25.81 25859 65 6003 17961 25.05 23964 66 5972 17614 25.32 23586 67 5862 16901 25.75 22763 68 5724 16956 25.24 22680 69 6264 17309 26.57 23573 70 6074 17164 26.14 23238 71 5754 16853 25.45 22607 72 5473 16375 25.05 21848 73 5620 16065 25.92 21685 74 5570 16262 25.51 21832 75 5567 15782 26.08 21349 76 5339 16116 24.88 21455 77 5836 16460 26.18 22296 78 5111 14526 26.03 19637 79 4672 0 100.00 4672 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1414 94386 1.48 95800 2 1187 101508 1.16 102695 3 966 101809 0.94 102775 4 884 92356 0.95 93240 5 955 93597 1.01 94552 6 1145 98117 1.15 99262 7 1194 91673 1.29 92867 8 1271 87560 1.43 88831 9 1483 91746 1.59 93229 10 1619 88117 1.80 89736 11 1674 85251 1.93 86925 12 1640 86561 1.86 88201 13 1592 96841 1.62 98433 14 1295 82159 1.55 83454 15 1190 84861 1.38 86051 16 964 83942 1.14 84906 17 854 78390 1.08 79244 18 845 80835 1.03 81680 19 858 76372 1.11 77230 20 791 74923 1.04 75714 21 749 73123 1.01 73872 22 711 69118 1.02 69829 23 689 71057 0.96 71746 24 671 70869 0.94 71540 25 680 67232 1.00 67912 26 682 66891 1.01 67573 27 721 68332 1.04 69053 28 722 65133 1.10 65855 29 685 67607 1.00 68292 30 711 64954 1.08 65665 31 718 61685 1.15 62403 32 664 60418 1.09 61082 33 661 66443 0.99 67104 34 639 61446 1.03 62085 35 671 60534 1.10 61205 36 649 60712 1.06 61361 37 689 57652 1.18 58341 38 635 56234 1.12 56869 39 577 57457 0.99 58034 40 638 55721 1.13 56359 41 563 55522 1.00 56085 42 595 56572 1.04 57167 43 636 55909 1.12 56545 44 523 51902 1.00 52425 45 537 53201 1.00 53738 46 485 50083 0.96 50568 47 595 53420 1.10 54015 48 534 52140 1.01 52674 49 563 50665 1.10 51228 50 508 50583 0.99 51091 51 531 51340 1.02 51871 52 484 47668 1.01 48152 53 498 46657 1.06 47155 54 484 48261 0.99 48745 55 460 46049 0.99 46509 56 451 44512 1.00 44963 57 495 46543 1.05 47038 58 437 43427 1.00 43864 59 430 43098 0.99 43528 60 433 42630 1.01 43063 61 407 41428 0.97 41835 62 390 40358 0.96 40748 63 431 40954 1.04 41385 64 378 39905 0.94 40283 65 443 42905 1.02 43348 66 387 38792 0.99 39179 67 374 38665 0.96 39039 68 343 36898 0.92 37241 69 388 38796 0.99 39184 70 437 37981 1.14 38418 71 450 39306 1.13 39756 72 390 37757 1.02 38147 73 357 35280 1.00 35637 74 349 34721 1.00 35070 75 390 36275 1.06 36665 76 352 34371 1.01 34723 77 335 34034 0.97 34369 78 294 33275 0.88 33569 79 238 0 100.00 238 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6581 337497 1.91 344078 2 6662 327624 1.99 334286 3 6696 320527 2.05 327223 4 6149 308347 1.96 314496 5 6486 305299 2.08 311785 6 6307 302200 2.04 308507 7 6604 319762 2.02 326366 8 6393 303565 2.06 309958 9 6673 296923 2.20 303596 10 6782 287801 2.30 294583 11 6842 281074 2.38 287916 12 6696 273725 2.39 280421 13 6640 269322 2.41 275962 14 6642 264461 2.45 271103 15 6628 270478 2.39 277106 16 5783 267889 2.11 273672 17 5739 263895 2.13 269634 18 5700 274468 2.03 280168 19 5562 253377 2.15 258939 20 5314 262557 1.98 267871 21 5043 249108 1.98 254151 22 4992 250790 1.95 255782 23 5118 240067 2.09 245185 24 4778 238219 1.97 242997 25 4687 236874 1.94 241561 26 4501 239340 1.85 243841 27 4566 233899 1.91 238465 28 4360 229348 1.87 233708 29 4369 230850 1.86 235219 30 4292 226148 1.86 230440 31 4205 221001 1.87 225206 32 4151 211808 1.92 215959 33 4069 210947 1.89 215016 34 3714 204409 1.78 208123 35 4021 210539 1.87 214560 36 3894 204895 1.87 208789 37 3738 208845 1.76 212583 38 3675 201131 1.79 204806 39 3726 194800 1.88 198526 40 3706 200276 1.82 203982 41 3646 191112 1.87 194758 42 3462 188974 1.80 192436 43 3522 189176 1.83 192698 44 3479 182670 1.87 186149 45 3351 184462 1.78 187813 46 3324 178776 1.83 182100 47 3289 177921 1.82 181210 48 3274 182213 1.77 185487 49 3250 176861 1.80 180111 50 3216 170396 1.85 173612 51 3177 168907 1.85 172084 52 3094 167226 1.82 170320 53 3122 165325 1.85 168447 54 2941 165301 1.75 168242 55 2903 163899 1.74 166802 56 2970 158375 1.84 161345 57 2983 156082 1.88 159065 58 2871 156886 1.80 159757 59 2864 158501 1.77 161365 60 2936 153189 1.88 156125 61 2876 152402 1.85 155278 62 2769 150302 1.81 153071 63 2704 148892 1.78 151596 64 2642 146585 1.77 149227 65 2630 145376 1.78 148006 66 2460 143464 1.69 145924 67 2487 141645 1.73 144132 68 2374 137945 1.69 140319 69 2396 137234 1.72 139630 70 2455 135931 1.77 138386 71 2401 134747 1.75 137148 72 2262 133200 1.67 135462 73 2334 131296 1.75 133630 74 2249 129254 1.71 131503 75 2203 126782 1.71 128985 76 2045 125194 1.61 127239 77 2099 123703 1.67 125802 78 1776 118957 1.47 120733 79 1211 0 100.00 1211