/gscratch/scrubbed/sr320/0924/EPI-162_S9_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-162_S9_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
22746423
Paired-end alignments with a unique best hit
7982139
Pairs without alignments under any condition
12293756
Pairs that did not map uniquely
2470528
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
182398480
Methylated C's in CpG context
5917870
Methylated C's in CHG context
561612
Methylated C's in CHH context
2425318
Methylated C's in Unknown context
26840
Unmethylated C's in CpG context
18231986
Unmethylated C's in CHG context
37832540
Unmethylated C's in CHH context
117429154
Unmethylated C's in Unknown context
378028
Percentage methylation (CpG context)
24.5%
Percentage methylation (CHG context)
1.5%
Percentage methylation (CHH context)
2.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3917194
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4064945
original bottom strand
Deduplication
Alignments analysed
7982139
Unique alignments
6171703
Duplicates removed
1810436
Duplicated alignments were found at 1100252 different positions
