CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 36611 100106 26.78 136717 2 35931 99327 26.56 135258 3 35615 98512 26.55 134127 4 35250 99215 26.22 134465 5 35228 98200 26.40 133428 6 35271 97711 26.52 132982 7 35144 99435 26.11 134579 8 35917 99043 26.61 134960 9 34534 100132 25.64 134666 10 34485 99594 25.72 134079 11 35097 98102 26.35 133199 12 34087 95681 26.27 129768 13 34677 95937 26.55 130614 14 35206 94663 27.11 129869 15 34483 94580 26.72 129063 16 34367 95603 26.44 129970 17 33403 93969 26.22 127372 18 33130 93385 26.19 126515 19 34464 95791 26.46 130255 20 34020 94133 26.55 128153 21 34415 94621 26.67 129036 22 35061 96533 26.64 131594 23 34530 94842 26.69 129372 24 33891 93910 26.52 127801 25 34579 92892 27.13 127471 26 34732 94349 26.91 129081 27 34298 92143 27.13 126441 28 33775 92291 26.79 126066 29 34898 92930 27.30 127828 30 33622 93339 26.48 126961 31 34356 93166 26.94 127522 32 34264 94828 26.54 129092 33 33457 90122 27.07 123579 34 32389 89709 26.53 122098 35 32247 87763 26.87 120010 36 31710 86802 26.76 118512 37 31922 87895 26.64 119817 38 32020 86940 26.92 118960 39 32231 85971 27.27 118202 40 31246 86283 26.59 117529 41 31350 84232 27.12 115582 42 30981 84620 26.80 115601 43 30201 83911 26.47 114112 44 29946 83604 26.37 113550 45 29909 82565 26.59 112474 46 30622 83047 26.94 113669 47 29761 81284 26.80 111045 48 28853 80469 26.39 109322 49 28845 79674 26.58 108519 50 28883 78670 26.85 107553 51 27870 77814 26.37 105684 52 27872 77215 26.52 105087 53 27593 76114 26.61 103707 54 27134 75113 26.54 102247 55 26493 74236 26.30 100729 56 26136 73510 26.23 99646 57 26151 72338 26.55 98489 58 26096 72889 26.36 98985 59 25719 71436 26.47 97155 60 25345 70683 26.39 96028 61 24913 71000 25.97 95913 62 24310 68899 26.08 93209 63 24717 69632 26.20 94349 64 24096 69129 25.85 93225 65 24021 67755 26.17 91776 66 23378 66541 26.00 89919 67 22723 65993 25.61 88716 68 22803 65757 25.75 88560 69 22488 64364 25.89 86852 70 22360 64252 25.82 86612 71 21908 62910 25.83 84818 72 21460 62836 25.46 84296 73 21330 62698 25.38 84028 74 21267 61875 25.58 83142 75 21018 61282 25.54 82300 76 20979 60754 25.67 81733 77 20283 58485 25.75 78768 78 18961 55101 25.60 74062 79 15019 42973 25.90 57992 80 19292 54600 26.11 73892 81 17985 53923 25.01 71908 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1938 205064 0.94 207002 2 2207 203261 1.07 205468 3 2088 206265 1.00 208353 4 2018 208097 0.96 210115 5 1973 203489 0.96 205462 6 2393 204833 1.15 207226 7 2147 207216 1.03 209363 8 2050 205028 0.99 207078 9 2477 206791 1.18 209268 10 2198 209974 1.04 212172 11 2148 204710 1.04 206858 12 2198 207008 1.05 209206 13 2131 206771 1.02 208902 14 1988 204264 0.96 206252 15 2088 204254 1.01 206342 16 1865 207420 0.89 209285 17 1999 202173 0.98 204172 18 2132 205627 1.03 207759 19 1885 205038 0.91 206923 20 2007 203482 0.98 205489 21 2190 202847 1.07 205037 22 2247 205093 1.08 207340 23 2117 200110 1.05 202227 24 2224 201183 1.09 203407 25 2280 201736 1.12 204016 26 2268 199890 1.12 202158 27 2371 199805 1.17 202176 28 2295 203812 1.11 206107 29 2357 198168 1.18 200525 30 2403 197615 1.20 200018 31 2313 199043 1.15 201356 32 2369 197746 1.18 200115 33 2374 194331 1.21 196705 34 2516 196756 1.26 199272 35 2482 192680 1.27 195162 36 2533 193097 1.29 195630 37 2462 191700 1.27 194162 38 2315 189289 1.21 191604 39 2314 188784 1.21 191098 40 2532 189073 1.32 191605 41 2515 186771 1.33 189286 42 2546 186406 1.35 188952 43 2482 184378 1.33 186860 44 2543 183370 1.37 185913 45 2740 181734 1.49 184474 46 2497 179154 1.37 181651 47 2512 173973 1.42 176485 48 2673 174730 1.51 177403 49 2431 173545 1.38 175976 50 2297 169017 1.34 171314 51 2361 168460 1.38 170821 52 2371 168006 1.39 170377 53 2261 165638 1.35 167899 54 2407 163711 1.45 166118 55 2332 163571 1.41 165903 56 2309 158803 1.43 161112 57 2457 158742 1.52 161199 58 2234 156833 1.40 159067 59 2236 153205 1.44 155441 60 2233 152867 1.44 155100 61 2206 150587 1.44 152793 62 2206 148348 1.47 150554 63 2208 149529 1.46 151737 64 2227 148534 1.48 150761 65 2354 146068 1.59 148422 66 2333 145463 1.58 147796 67 2141 145801 1.45 147942 68 2366 142308 1.64 144674 69 2216 140975 1.55 143191 70 2146 140387 1.51 142533 71 2083 136223 1.51 138306 72 2220 138116 1.58 140336 73 2292 135740 1.66 138032 74 2223 132379 1.65 134602 75 2204 130496 1.66 132700 76 2223 129912 1.68 132135 77 2090 118109 1.74 120199 78 1832 108691 1.66 110523 79 1128 69940 1.59 71068 80 1408 71239 1.94 72647 81 3202 117563 2.65 120765 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12383 669528 1.82 681911 2 13677 671435 2.00 685112 3 15130 673845 2.20 688975 4 12543 676946 1.82 689489 5 13205 677918 1.91 691123 6 15422 683556 2.21 698978 7 12724 685597 1.82 698321 8 12813 688059 1.83 700872 9 15579 688178 2.21 703757 10 12898 683454 1.85 696352 11 13493 676248 1.96 689741 12 15091 677981 2.18 693072 13 12837 676736 1.86 689573 14 14165 679922 2.04 694087 15 15557 673205 2.26 688762 16 12593 679381 1.82 691974 17 12754 674286 1.86 687040 18 14916 677541 2.15 692457 19 11964 672367 1.75 684331 20 12508 669021 1.84 681529 21 14640 672221 2.13 686861 22 12730 674122 1.85 686852 23 13451 664184 1.98 677635 24 14492 667660 2.12 682152 25 12498 660223 1.86 672721 26 12502 658399 1.86 670901 27 14374 655125 2.15 669499 28 11807 652772 1.78 664579 29 12225 644459 1.86 656684 30 13916 641214 2.12 655130 31 11506 634480 1.78 645986 32 12808 629366 1.99 642174 33 14255 624349 2.23 638604 34 12056 621806 1.90 633862 35 12423 618005 1.97 630428 36 14065 614706 2.24 628771 37 11498 617337 1.83 628835 38 12030 613492 1.92 625522 39 13981 612413 2.23 626394 40 11324 604826 1.84 616150 41 12146 598450 1.99 610596 42 13379 588863 2.22 602242 43 11335 585118 1.90 596453 44 12300 579459 2.08 591759 45 13389 575644 2.27 589033 46 11045 570641 1.90 581686 47 11433 565954 1.98 577387 48 12880 561960 2.24 574840 49 10735 557298 1.89 568033 50 10996 551616 1.95 562612 51 12650 547798 2.26 560448 52 10627 545012 1.91 555639 53 11706 533756 2.15 545462 54 12271 531164 2.26 543435 55 10394 526839 1.93 537233 56 10556 522615 1.98 533171 57 12232 517127 2.31 529359 58 9924 513065 1.90 522989 59 10313 508772 1.99 519085 60 11745 502665 2.28 514410 61 9982 496489 1.97 506471 62 10648 489540 2.13 500188 63 11755 486118 2.36 497873 64 9979 479634 2.04 489613 65 10342 471572 2.15 481914 66 11083 466104 2.32 477187 67 9594 462975 2.03 472569 68 9870 457741 2.11 467611 69 10927 452615 2.36 463542 70 9239 447626 2.02 456865 71 9627 442456 2.13 452083 72 10212 439646 2.27 449858 73 8969 434612 2.02 443581 74 9248 427229 2.12 436477 75 10322 421434 2.39 431756 76 8481 411951 2.02 420432 77 8650 398888 2.12 407538 78 9086 371078 2.39 380164 79 5160 256260 1.97 261420 80 5725 226690 2.46 232415 81 9084 374287 2.37 383371 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14448 47129 23.46 61577 2 14707 48168 23.39 62875 3 13914 46562 23.01 60476 4 13120 43569 23.14 56689 5 14692 46939 23.84 61631 6 13436 44260 23.29 57696 7 14622 44606 24.69 59228 8 13608 43094 24.00 56702 9 13819 43972 23.91 57791 10 13510 41411 24.60 54921 11 13089 41490 23.98 54579 12 12426 38621 24.34 51047 13 13626 39266 25.76 52892 14 12926 39806 24.51 52732 15 15265 41156 27.06 56421 16 13003 37638 25.68 50641 17 13240 37415 26.14 50655 18 12187 36848 24.85 49035 19 12475 35807 25.84 48282 20 13146 35575 26.98 48721 21 12022 35347 25.38 47369 22 11892 35366 25.16 47258 23 12039 34433 25.91 46472 24 11335 33609 25.22 44944 25 13145 36384 26.54 49529 26 11069 30967 26.33 42036 27 11159 32285 25.69 43444 28 11217 31918 26.00 43135 29 10850 32359 25.11 43209 30 10339 30189 25.51 40528 31 10194 29458 25.71 39652 32 10147 29929 25.32 40076 33 10481 29436 26.26 39917 34 10158 28855 26.04 39013 35 10239 28933 26.14 39172 36 9524 27976 25.40 37500 37 9804 28472 25.61 38276 38 9640 27611 25.88 37251 39 9617 26453 26.66 36070 40 9551 26648 26.38 36199 41 8656 25664 25.22 34320 42 8602 25556 25.18 34158 43 9391 25251 27.11 34642 44 8684 24520 26.15 33204 45 8562 23624 26.60 32186 46 8797 24257 26.61 33054 47 8381 24526 25.47 32907 48 8780 24665 26.25 33445 49 8019 22646 26.15 30665 50 7897 22863 25.67 30760 51 7955 21649 26.87 29604 52 7481 21324 25.97 28805 53 7744 22028 26.01 29772 54 6935 20489 25.29 27424 55 7023 20644 25.38 27667 56 7118 20085 26.17 27203 57 7042 19985 26.06 27027 58 6978 20277 25.60 27255 59 6629 19705 25.17 26334 60 6493 18845 25.63 25338 61 6547 18896 25.73 25443 62 6494 18953 25.52 25447 63 6576 18260 26.48 24836 64 7221 19290 27.24 26511 65 6209 18099 25.54 24308 66 6175 18078 25.46 24253 67 6172 17103 26.52 23275 68 6028 17072 26.10 23100 69 6323 17344 26.72 23667 70 6065 17215 26.05 23280 71 6012 16951 26.18 22963 72 5709 16635 25.55 22344 73 5694 16393 25.78 22087 74 5743 16241 26.12 21984 75 5721 16017 26.32 21738 76 5685 15930 26.30 21615 77 5929 16536 26.39 22465 78 5403 14756 26.80 20159 79 4803 0 100.00 4803 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1488 96739 1.51 98227 2 1136 103490 1.09 104626 3 980 103852 0.93 104832 4 836 94551 0.88 95387 5 975 95177 1.01 96152 6 1093 99399 1.09 100492 7 1157 93117 1.23 94274 8 1258 88248 1.41 89506 9 1434 92930 1.52 94364 10 1625 90003 1.77 91628 11 1609 86120 1.83 87729 12 1559 88287 1.74 89846 13 1572 97075 1.59 98647 14 1316 84156 1.54 85472 15 1130 86808 1.28 87938 16 938 85726 1.08 86664 17 820 79609 1.02 80429 18 771 82058 0.93 82829 19 754 78032 0.96 78786 20 736 76057 0.96 76793 21 737 74962 0.97 75699 22 630 71093 0.88 71723 23 646 72023 0.89 72669 24 715 72315 0.98 73030 25 685 68369 0.99 69054 26 673 67916 0.98 68589 27 635 70365 0.89 71000 28 663 66528 0.99 67191 29 670 68932 0.96 69602 30 682 66501 1.02 67183 31 640 62929 1.01 63569 32 658 61230 1.06 61888 33 691 67988 1.01 68679 34 601 63446 0.94 64047 35 636 61507 1.02 62143 36 612 61851 0.98 62463 37 665 58248 1.13 58913 38 577 58140 0.98 58717 39 594 58845 1.00 59439 40 638 57140 1.10 57778 41 561 56741 0.98 57302 42 588 57838 1.01 58426 43 560 57025 0.97 57585 44 487 53122 0.91 53609 45 573 54449 1.04 55022 46 475 51023 0.92 51498 47 575 54269 1.05 54844 48 492 52769 0.92 53261 49 516 52710 0.97 53226 50 481 51321 0.93 51802 51 521 52065 0.99 52586 52 476 48455 0.97 48931 53 473 47824 0.98 48297 54 489 49561 0.98 50050 55 460 47232 0.96 47692 56 417 45393 0.91 45810 57 441 47319 0.92 47760 58 438 44071 0.98 44509 59 455 44139 1.02 44594 60 446 43545 1.01 43991 61 412 41954 0.97 42366 62 387 41281 0.93 41668 63 431 41726 1.02 42157 64 376 40141 0.93 40517 65 389 43561 0.89 43950 66 368 39750 0.92 40118 67 377 39238 0.95 39615 68 385 37651 1.01 38036 69 406 39530 1.02 39936 70 417 38886 1.06 39303 71 376 39623 0.94 39999 72 356 38081 0.93 38437 73 373 36504 1.01 36877 74 351 35366 0.98 35717 75 366 36383 1.00 36749 76 341 35040 0.96 35381 77 350 34182 1.01 34532 78 297 33684 0.87 33981 79 231 0 100.00 231 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6416 347673 1.81 354089 2 6507 337562 1.89 344069 3 6384 331335 1.89 337719 4 5928 316538 1.84 322466 5 6402 315613 1.99 322015 6 6033 311757 1.90 317790 7 6339 328767 1.89 335106 8 6360 312679 1.99 319039 9 6430 304771 2.07 311201 10 6524 297100 2.15 303624 11 6525 290640 2.20 297165 12 6525 283967 2.25 290492 13 6424 278320 2.26 284744 14 6661 274671 2.37 281332 15 6185 280876 2.15 287061 16 5568 277100 1.97 282668 17 5612 274128 2.01 279740 18 5471 283770 1.89 289241 19 5109 263785 1.90 268894 20 5208 271906 1.88 277114 21 4901 258737 1.86 263638 22 4764 260628 1.80 265392 23 4865 249924 1.91 254789 24 4559 247858 1.81 252417 25 4543 247253 1.80 251796 26 4543 249153 1.79 253696 27 4235 242950 1.71 247185 28 4305 238738 1.77 243043 29 4323 240301 1.77 244624 30 4164 235190 1.74 239354 31 4035 230916 1.72 234951 32 4063 220413 1.81 224476 33 3861 219653 1.73 223514 34 3735 214688 1.71 218423 35 3953 219258 1.77 223211 36 3502 212457 1.62 215959 37 3539 217012 1.60 220551 38 3684 209195 1.73 212879 39 3589 203207 1.74 206796 40 3468 209235 1.63 212703 41 3609 198787 1.78 202396 42 3251 197808 1.62 201059 43 3328 197558 1.66 200886 44 3440 191543 1.76 194983 45 3241 192537 1.66 195778 46 3196 185544 1.69 188740 47 3124 184909 1.66 188033 48 3085 190197 1.60 193282 49 3064 183862 1.64 186926 50 2988 178315 1.65 181303 51 2988 176856 1.66 179844 52 2937 173677 1.66 176614 53 2993 172936 1.70 175929 54 2811 171967 1.61 174778 55 2881 170798 1.66 173679 56 2737 165219 1.63 167956 57 2776 162480 1.68 165256 58 2725 162426 1.65 165151 59 2722 164384 1.63 167106 60 2645 158273 1.64 160918 61 2680 158749 1.66 161429 62 2635 156190 1.66 158825 63 2488 154297 1.59 156785 64 2575 152600 1.66 155175 65 2579 150914 1.68 153493 66 2288 150133 1.50 152421 67 2386 147578 1.59 149964 68 2312 143596 1.58 145908 69 2203 142532 1.52 144735 70 2297 140662 1.61 142959 71 2281 140138 1.60 142419 72 2224 138828 1.58 141052 73 2184 136838 1.57 139022 74 2183 135335 1.59 137518 75 2075 132893 1.54 134968 76 2025 129618 1.54 131643 77 1926 129913 1.46 131839 78 1631 122735 1.31 124366 79 1170 0 100.00 1170